Search Results for "data analysis" - Page 40
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Showing 2195 open source projects for "data analysis"
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Kalibr Allan
IMU Allan standard deviation charts
...While manufacturers typically provide “white noise” values in IMU datasheets, the bias instability and random walk parameters must be determined experimentally. This project enables users to compute those values using Allan variance analysis from recorded IMU data. The workflow involves recording IMU measurements with the device stationary, converting ROS bag files into MATLAB-compatible formats, and then running MATLAB scripts to generate Allan deviation plots. These plots are analyzed to determine noise density and random walk parameters for both gyroscopes and accelerometers. ... -
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Pipelines
An experimental programming language for data flow
Pipelines is a language and runtime for crafting massively parallel pipelines. Unlike other languages for defining data flow, the Pipeline language requires the implementation of components to be defined separately in the Python scripting language. This allows the details of implementations to be separated from the structure of the pipeline while providing access to thousands of active libraries for machine learning, data analysis, and processing. -
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GeoNotebook
A Jupyter notebook extension for geospatial visualization and analysis
GeoNotebook is an open-source extension to the Jupyter Notebook ecosystem that equips users with powerful geospatial visualization and analysis capabilities directly within the notebook interface. It integrates with GeoJS and other geospatial services to enable rich, interactive map rendering, layer control, and GIS data manipulation alongside traditional code and markdown cells in a Jupyter environment. Users can execute Python geospatial analysis and immediately visualize results on slippy web maps, allowing them to explore, annotate, and interpret large spatial datasets without leaving the notebook. ... -
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ATLAS_mPBPK
Modeling and Simulation of mPBPK models
ATLAS mPBPK is a MATLAb-based tool for modeling and Simulation of minimal Physiology Based Pharmacokinetic (mPBPK) models of small and large molecules. The tool enables the users to perform: i) PK data visualization, ii) simulation, iii) parameter optimization, and iv) local sensitivity analysis (SA) of mPBPK models in a simple and efficient manner. -
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altanalyze
Alternative splicing and functional prediction analysis tool
AltAnalyze is a freely available, open-source and cross-platform program that allows you to take RNASeq or relatively raw microarray data (CEL files or normalized), identify predicted alternative splicing or alternative promoter changes and view how these changes may affect protein sequence, domain composition, and microRNA targeting. AltAnalyze is compatible with any RNASeq data (exons and/or junctions), several Affymetrix splicing sensitive array types (Gene 1.0, Exon 1.0, junction) as... -
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TaBS-Pipe
Targeted Bisulfite Sequencing Data Analysis Pipeline v1.0.2
A pipeline to analyze the data obtained from targeted bisulfite sequencing through the ion-torrent platform. TaBSAP is a pipeline to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step and enables a researcher to analyze the methylation levels of their samples straight away. It's main features are: -Bisulfite mapping and methylation calling in one single step -Supports single-end read alignments -Alignment seed length,... -
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CompleXChange
differential analysis of combinatorial protein complexes
The increasing wealth of transcriptomic data and current computational tools enable to infer how protein interactomes and complexomes may be assembled in specific samples. With CompleXChange this information can be exploited to conduct differential analyses of the dynamic protein complexome in a quantitative manner. The corresponding publication can be found on https://doi.org/10.1186/s12859-019-2852-z. -
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Phusion2
The genome assembly pipeline based on read clustering
Phusion2 is a pipeline for de novo genome assembly using NGS data. It is based upon a strategy called read clustering. Starting with kmer frequency analysis, this allows for a reasonable selection of the kmer sizes. K-tuples from raw reads are merged and sorted into a table so that multiple occurring kmer words shared by different reads can be linked. A relation matrix is used to record the shared kmer words among all the reads. -
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SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
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mk1utils
mk1utils: tools for the Wersi MK1, EX20, DX10, EX10R, DX5
mk1utils: tools for the Wersi MK1, EX20, DX10, EX10R, DX5 Included tools: * mk1parse: parse SYX and ROM/RAM files of Wersi MK1, EX20, DX10, EX10R, DX5 * mk1reqall: create SYX and MIDI files for requesting voices from Wersi MK1, EX20, DX10, EX10R * romcvp_dx10_to_mk1: convert CVs+Presets ROM/RAM from Wersi DX10 to MK1 format Special features: Decoding of envelope microcode (modul, special, and standard), rhythms, and sequences. Export of rhythms to MIDI files and waves to WAV files.... -
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NanoR
R package built to analyze and compare Nanopore data
NanoR is a package for the statistical language and environment R, tested on Unix, MacOSX and Windows, that allows user-friendly analysis and comparison of 1D MinION and GridION X5 sequencing data within acceptable time frames. -
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Finetune Transformer LM
Code for "Improving Language Understanding by Generative Pre-Training"
...It documents that runs are non-deterministic due to certain GPU operations and reports a median accuracy over multiple trials that is slightly below the single-run result in the paper, reflecting expected variance in practice. The project ships lightweight training, data, and analysis scripts, keeping the footprint small while making the experimental pipeline transparent. It is provided as archived, research-grade code intended for replication and study rather than continuous development. -
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Central Proteomics Facilities Pipeline
A data analysis pipeline for shotgun mass-spectrometry proteomics.
CPFP provides a pipeline for the analysis of MS/MS proteomic data, targeted at the needs of central proteomics facilities. == Project Status - Updated January 3rd 2019 == CPFP has not been actively developed since 2014, when I left the proteomics group at UTSW. To access up-to-date algorithms for the analysis of proteomics data, other tools would now be preferred. -
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PivotTable.js
Open-source Javascript Pivot Table
...Built atop jQuery and jQueryUI, it allows users to drag and drop fields into rows, columns, and aggregators to slice and summarize datasets. It also integrates with Python and R via modules like pivottablejs, making it versatile for data analysis across platforms. -
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MIRA V5 is available only on GitHub! The V4 version released here on SourceForge stay up as some automated release fetching packages rely on V4. MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
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Functional, Data Science Intro To Python
[tutorial]A functional, Data Science focused introduction to Python
The first section is an intentionally brief, functional, data science-centric introduction to Python. The assumption is a someone with zero experience in programming can follow this tutorial and learn Python with the smallest amount of information possible. The sections after that, involve varying levels of difficulty and cover topics as diverse as Machine Learning, Linear Optimization, build systems, command line tools, recommendation engines, Sentiment Analysis and Cloud Computing. -
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BTable
A drill-anywhere component for Pentaho CDE
...Dashboard users can easily interact with the table through a context menu that allows to: - add, change or remove dimensions - add, change or remove measures - create cross tables - display grand totals and subtotals - sort by dimensions or measures - add additional filters to the table - unlink the table from the dashboard context to stop listening to external parameters - drill a cell or drill a row/column - swap axes - export data and also formatting to Excel - save the current analysis to a file Dashboard designers can build flexible and rich tables with little effort and without writing MDX queries. Also available on Pentaho Marketplace. -
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Radiance
Highly accurate ray-tracing software system for UNIX computers
Radiance is a free, highly accurate ray-tracing software system for UNIX computers. It is a suite of programs designed for the analysis and visualization of lighting in design. Radiance is superior to simpler lighting calculation and rendering tools in that there are no limitations on the geometry or the materials that may be simulated. Scene geometry, materials, luminaires, time, date and sky conditions (for daylight calculations) are specified; spectral radiance (ie. luminance +... -
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Vibtoolbox is a set of command line utilities for analysis of vibration and acoustic test data. The vibtoolbox utilities use the standard UNIX filter model and communicate via UNIX pipes.
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Sploit
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Novembre
STM data analysis
A tool for visualisation and analysis of STM and STS results. Currently supports RHK, WinSPM, Nanonis and Createc file formats. Other formats can be added. Tools are made available by plugins and are currently focused on spectroscopy manipulation. -
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Effectopedia is open knowledge aggregation and collaboration tool that provides a means of describing adverse outcome pathways in encyclopedic manner.
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OpenSeq2Seq
Toolkit for efficient experimentation with Speech Recognition
...The toolkit includes ready-made models for neural machine translation, automatic speech recognition, speech synthesis, language modeling, and additional NLP tasks such as sentiment analysis. It supports multi-GPU and multi-node data-parallel training, and integrates with Horovod to scale out across large GPU clusters. Mixed-precision support (float16) is optimized for NVIDIA Volta and Turing GPUs, allowing significant speedups and memory savings without sacrificing model quality. The project comes with configuration-driven training scripts, documentation, and examples that demonstrate how to set up pipelines for tasks. -
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pnData
A Matlab written tool to analyze data taken by the pnCCD detector.
test_gui is a modular tool for pnCCD data handling. It uses IDL type files (later 'frame' files). It plots and calculates different parameters related to XRF and XRD. A series of modules are attached for fitting and visualization. Test version 1 of this tool will be updated based on users needs. -
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dadosSemiotica
Collecter and manager of semiotica annalisis data
This program is a web application to collect and organize data of text analysis. It works with sets of texts and the analysis are done on portions of the length of a sentence. One of the preprocessing modules is based on CoGroo (A LibreOffice & OpenOffice.org Portuguese Grammar Checker).
