Showing 274 open source projects for "the co"

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  • 1
    SC_CoSiM

    SC_CoSiM

    SC_CoSiM is a plattform which focuses on validating a full system

    SC_CoSiM is a platform which focuses on validating a full system, by performing near real-time, command-to-command co-simulation of the hardware DUT implemented on FPGA as a full system prototype (with CPU, on-chip interconnect, memory, application, drivers, and OS, typically Linux) against its equivalent cycle-approximate system-level model of the DUT. Our work presented at DVCon-Europe 2018 extended the technology demonstrator from David C Black(https://github.com/dcblack...
    Downloads: 0 This Week
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  • 2

    PTM-X

    a solfware for predicting posttranslational modification cross-talk

    The PTM-X (PTM cross-talk) project is a freely available bioinformatics software platform that allows to calculate the features of PTM pairs and the posterior probabilities of being cross-talk pairs. The prediction model is a naive Bayse classifier that integrats five features: protein sequence distance, tertiary structural distance, co-location in a disordered region, residue co-evolution, and modification co-evolution. An online tool is also available at http://bioinfo.bjmu.edu.cn/ptm-x/.
    Downloads: 0 This Week
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  • 3

    CoVaMa

    Co-Variation Mapper

    CoVaMa (Co-Variation Mapper) (python) detects correlated patterns of mutations in a viral quasi-species. CoVaMa takes NGS alignment data (SAM) and populates large matrices of contingency tables that correspond to every possible pairwise interaction of nucleotides or amino acids in the viral genome. These tables are then analysed for evidence linkage disequilibrium. CoVaMa requires python version 2.7 and Numpy.
    Downloads: 0 This Week
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  • 4
    Qreate

    Qreate

    Qreate is a sandbox mod/extension for id software's Quake.

    Qreate is a sandbox mod/extension for id software's Quake. It allows you to spawn pretty much all the entities made available to use when making a map, but here you can place them in real-time. It is aiming to be compatible with every version of Quake. So if you are wondering if this mod runs on GLQuake, X11quake, WinQuake or PowerVRQuake then the answer is yes. Hint: Qreate requires a full registered version of Quake to run. It's not compatible with the Shareware version or QuakeWorld!
    Downloads: 0 This Week
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  • 5
    WireFactory Simulator

    WireFactory Simulator

    Small factory simulator for control logic test purpose

    ... implemented to help to test more complex automation systems during a doctorate course under guidance of: Supervisor: Prof. Dr. Roberto Silvio Ubertino Rosso Jr. Co-Supervisor: Prof. Dr. André Bittencourt Leal at Santa Catarina University State (UDESC) located in Joinville/Brazil. CONTACT INFO ------------ Leandro Israel Pinto leandroip.com leandro.israel.p@gmail.com
    Downloads: 0 This Week
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  • 6
    CamShaft
    Calculation of camshafts - allows to define a camshaft profile on the set trajectory which should provide the given mechanism. The trajectory can be set graphically, co-ordinates or function.
    Downloads: 5 This Week
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  • 7
    FUMOLA - Functional Mock-up Laboratory

    FUMOLA - Functional Mock-up Laboratory

    An FMI-based co-simulation framework.

    FUMOLA is a co-simulation framework specifically designed to support the features offered by the FMI specification. It provides a flexible platform that allows to configure and execute co-simulation setups in an easy way. FUMOLA is developed on top of the Ptolemy II framework (https://ptolemy.eecs.berkeley.edu) and the FMI++ library (http://fmipp.sourceforge.net). The online documentation of FUMOLA is available here: https://sourceforge.net/p/fumola/wiki/Home/
    Downloads: 0 This Week
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  • 8

    JILRuntime/JewelScript

    An object-oriented script language to embed in any application

    A general purpose, object-oriented script language that compiles into code for a register based virtual machine. The language is quite similar to object-oriented high-level languages like Java and C#. The library is entirely self-sufficient and ANSI C compliant. It's main purpose is to be embedded in any application to allow automation of that application through scripting. An integrated C++ binding code generator allows you to create bindings for your application's classes in seconds....
    Downloads: 0 This Week
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  • 9
    CG-FCA is a program that converts Conceptual Graph files in the .cgif format and 3 column csv files to Formal Context files in the .cxt format, for Formal Concept Analysis (FCA). CG-FCA also reports various graph features (such as cycles) and carries out joins of co-referent concepts and relations.
    Downloads: 0 This Week
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  • 10
    My first game project which is for now-older Jave ME (aka J2ME) technology. It will center around cooperation, interaction, and establishing a sense of wonder and true co-dependence. The main characters are a dwarf hamster (you) and a small snake (Greeenie).
    Downloads: 0 This Week
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  • 11

    Kerner Utilities - Collections

    Commonly used utility classes (java.util.collection related)

    This project extends the standard Java collections framework by additional utility classes. These classes mainly focus on aspects of procedural programming, so its types and features should become mostly obsolete with Java8.
    Downloads: 0 This Week
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  • 12

    Crosshub

    Multi-way analysis of The Cancer Genome Atlas (TCGA) project datasets

    Crosshub enables multi-way analysis of RNA-Seq, miRNA-Seq and methylome data of The Cancer Genome Atlas (TCGA) project: 1. differential expression analysis (genes, alternative transcripts and miRNA) 2. regulatory miRNA prediction (TargetScan, DIANA microT, mirSVR, PicTar, miRTarBase + co-expression) 3. regulatory TF prediction (ENCODE ChIP-Seq + co-expression) 4. methylation profiling analysis 5. RNA-Seq vs. clinical (TNM, stage, follow-up) correlation analysis Generates Excel summaries...
    Downloads: 2 This Week
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  • 13
    bel_fft

    bel_fft

    FFT co-processor in Verilog based on the KISS FFT

    bel_fft is a FFT co-processor that can calculate FFTs with arbitrary radix. It is a hardware implementation of the free software Kiss FFT ("Keep it simple, Stupid!"). The target was to allow a simple replacement of the software code with the hardware implementation. Therefore bel_fft comes with a software driver that is compatible with the Kiss FFT routines. bel_fft also has a modular architecture and allows interfacing different bus architectures. So far AMBA AXI, Altera's Avalon bus...
    Downloads: 2 This Week
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  • 14
    SimilarityViewer

    SimilarityViewer

    Identify co-occuring genes in cyanobacteria

    The SimilarityViewer allows the identification of genes co-occurring in subsets of 77 cyanobacterial organisms. The software is available as a MATLAB script and as stand-alone applications for Mac, Linux, and Windows computers. To install this program download the zip file appropriate for your system, unzip it, and follow the instructions in the README file. SimilarityViewer and the included data are licensed under the Apache License Version 2.0. If you use the SimilarityViewer...
    Downloads: 0 This Week
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  • 15
    AKtoolbox

    AKtoolbox

    Matlab Toolbox for coevolution analysis of multiple sequence alignment

    AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License. The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for MSA. At present, co-evolution methods available in this package are Statistical Coupling Analysis (SCA), Explicit Likelihood of Subset Covariance (ELSC), Mutual Information (MI), Observed Minus Expected...
    Downloads: 33 This Week
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  • 16
    mergepbx

    mergepbx

    script for merging XCode project files in git

    ... endeavour, as it would save me from solving the merge conflicts for my co-workers. Unfortunately, that script was finished only after the project ended. However, as I didn't want to let the work go to waste, this script is now published as open source under the GNU GPL 3. This script needs knowledge about the structure of Xcode's project. However, there doesn't seem to be any documentation (and I would be surprised if there were any).
    Downloads: 0 This Week
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  • 17
    WebcamStudio For GNU/Linux

    WebcamStudio For GNU/Linux

    A multifeatured virtual webcam software to broadcast over the Internet

    ========================= WEBCAMSTUDIO IS NO MORE MAINTAINED ========================= We are looking for someone to take over. If interested please contact: soylent.tv@gmail.com WebcamStudio is a multifeatured virtual webcam software that can be used with Skype or a flash website like UStream, to create a professional looking broadcast, including banners, animations, transit animations and icons, etc... This tool is not meant as a video editor but as a live video mixer giving you...
    Downloads: 12 This Week
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  • 18
    SGsim is a co-simulation framework consists mainly of the network simulator OMNeT++ and the power grid simulator OpenDSS. Abdalkarim Awad, Peter Bazan and Reinhard German, "SGsim: a Simulation Framework for Smart Grid Applications," Proceedings of the IEEE International Energy Conference, Dubrovnik, Croatia, pp. 730-736, May 2014
    Downloads: 0 This Week
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  • 19

    EpiMINE

    program for mining epigenomic data

    EpiMINE is a program designed for mining epigenomic data. This application performs genome wide based quantitative and correlative analysis between different annotated or raw chip-seq like datasets in the regions of interest (RI). Apart from this the tool takes the advantage in linking results with expression data. It is available both in graphical user interface and in command line form. It can be executed in Mac and Linux platforms. Dependencies: python >= 2.7 version python...
    Downloads: 5 This Week
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  • 20
    RED

    RED

    RED-RNA Editing sites Detector.

    RED(RNA Editing Detector) is a program to detect and visualise RNA editing events at genomic scale using next-generation sequencing data. RED can also be used in command line. RNA editing is one of the post- or co-transcriptional processes with modification of RNA nucleotides from their genome-encoded sequence. In human, RNA editing event occurs mostly by deamination of adenosine to inosine (A-to-I) conversion through ADAR enzymes.
    Downloads: 0 This Week
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  • 21

    ES1-2016-EIC1-10

    Althy&Co Server

    Cláudio Lopes 69068 cjcls@iscte.pt João Januário 69004 jffjo@iscte.pt Jorge Costa 69940 jtmca1@iscte.pt Group 1 Group 11 Group 16 To develop this project we used : - Server; - Client GUI; - Network; - Filter.
    Downloads: 0 This Week
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  • 22
    The software can be used to co-localize spots in 2 or 3 movies containing single molecule fluorescence data with surface immobilized molecules. If movies are taken on more than 1 camera, offset files can be made and then used to warp one of the movies (or two of the movies if working with three). Time traces for identified spot triples and pairs can be subsequently viewed. The software was created at the University of Colorado Boulder by James Goodrich, with the help of Abigail Horn...
    Downloads: 0 This Week
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  • 23
    GloVe

    GloVe

    GloVe model for distributed word representation

    GloVe is an unsupervised learning algorithm for obtaining vector representations for words. Training is performed on aggregated global word-word co-occurrence statistics from a corpus, and the resulting representations showcase interesting linear substructures of the word vector space. The links provided contain word vectors obtained from the respective corpora. If you want word vectors trained on massive web datasets, you need only download one of these text files! Pre-trained word vectors...
    Downloads: 0 This Week
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  • 24

    flAVR

    A simulator for Atmel's 8/16-bit AVR microcontrollers

    ... protocol, allowing it to interface with Eclipse and other IDEs supporting GDB. The simulator also supports kernel-aware co-simulation when running binaries linked with the Mark3 RTOS, providing it with virtual input and graphics devices. The project is designed to be highly-portable, and builds with minimal dependencies. Currently, flAVR builds have are targeted to Windows (MinGW) and Linux (GCC).
    Downloads: 4 This Week
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  • 25
    CoNet

    CoNet

    Find relationships between repeatedly observed items

    CoNet is a Cytoscape plugin that detects significant non-random patterns of co-occurrence (copresence and mutual exclusion) in incidence and abundance data. It has been designed with (microbial) ecological data in mind, but can be applied in general to infer relationships between objects observed in different samples (for example between genes present or absent across organisms).
    Downloads: 0 This Week
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