Search Results for "2d-structural analysis of beams" - Page 4
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Showing 131 open source projects for "2d-structural analysis of beams"
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CNV Explorer
Interactive Copy Number Analysis for Cancer Genomics
CNV Explorer for Gene discovery: https://arraycgh.shinyapps.io/CNV_Explorer/ CNV Explorer for survival analysis: https://arraycgh.shinyapps.io/CNV_Explorer_Survival/ CNV_Explorer is a data mining tool for cancer researchers interested in the structural and copy number changes that happen in cancer genomes. Huge volumes of genomics data from nearly every cancer type are now freely available and several online databases have begun to collate and store this information. However... -
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OpenFlux2 is an extended version of OpenFLUX (https://sourceforge.net/projects/openflux/) - the modern MATLAB-based modelling software for 13C flux analysis (MFA). The following features were implemented in OpenFLUX2, which were not present in original software: integrated support for calculation and analysis of parallel labeling experiments (PLE), extended statistical analysis of parameter estimation results, calculation of fluxes and measurements correlation, structural identifiability...
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xPyder PyMOL Plugin
Analyze and visualize coupled residues and their networks in proteins
xPyder is a PyMOL plugin to analyze and visualize on the 3D structure dynamical cross-correlation matrices (DCCM), linear mutual information (LMI), communication propensities (CP), intra- and inter-molecular interactions (e.g. PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data... -
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PyInteraph
analysis of interaction networks in structural ensembles of proteins
PyInteraph is a software research tool for the analysis of structural communication protein ensembles. It has been designed to analyze MD and structural ensembles with attention to binary interactions between residues, such as hydrogen bonds, salt bridges, and hydrophobic interactions. Once the interactions have been calculated, it is able to use different classes of intra- and intermolecular interactions, combined or alone, to calculate comprehensive interaction graphs. These graphs can... -
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QUDeX-MS
Hydrogen/deuterium exchange estimation for isotopic fine structure MS
Hydrogen-deuterium exchange coupled to mass spectrometry permits analysis of structural dynamics, stability, and molecular interactions of proteins. Resolving isotopic fine structure during mass spectrometry has been recently demonstrated to allow direct detection and quantification of deuterium incorporation distinct from peaks corresponding to non-deuterium incorporated natural abundance heavy isotopomers. Here, we present a graphical tool that allows for a rapid and automated estimation... -
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BoneSlicer
Experimental G-Code-Generator for variable density infill in FFF parts
BoneSlicer is an experimental G-Code-Generator written in Java that allows creating load-adapted infill for 3D printed (FFF) parts, inspired by the adaptive structures of trabecular bone tissue. It uses a simple structural Finite Element Analysis to determine the distribution of mechanical stress within the part and offers tools to generate an infill structure consisting of multiple subareas of varying infill density. Subdivision of the infill area can be based on a broad spectrum of FEA result... -
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matImage
An image processing and analysis library for Matlab
MatImage is a Matlab library for image processing and analysis in 2D and 3D. It contains more than 250 fonctions for image enhancement, filtering, analysis, or visualisation, as well as for creating basic test shapes. It is built as a complement of the Mathworks image processing toolbox (IPT). Project is being transfered to GitHub: http://github.com/dlegland/matImage -
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DRAMMS
A Deformable Medical Image Registration Toolbox
DRAMMS is a software package designed for 2D-to-2D and 3D-to-3D deformable medical image registration tasks. Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse brain... -
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3D surface reconstruction has been proposed as a technique by which an object in the real world can be reconstructed from a set of only 2D digital images. This rubric is very useful in many applications including robot navigation, terrain modeling, remote surgery, shape analysis, computer interaction, scientific visualization, movie making, and computer aided design. In this work, we studied photometric stereo approach as a single view 3D reconstruction technique, performed experimental...
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SPADE
A toolkit for developing and deploying protein structure algorithms.
The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE. -
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ExafsArchitect
A tool kit for EXAFS/XAS/XES Analysis
ExafsArchitect helps you to create molecular models (or grids of molecular models) that allows you, by systematically varying the coordinates of ligands relevant to Chemistry and biology, to easily calculate and evaluate structural effects in EXAFS/XAS and XES spectra using FEFF and/or ORCA. -
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DNAA is the DNA analysis package, for analyzing next-generation post-alignment whole genome resequencing data. Specifically, DNAA is able to find structural variation, SNP and indel variants, as well as evaluating the mapping and data quality.
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The Engineering Software. The beam.
The engineering software for structural calculations of metal beams.
The engineering software for structural calculations of metal beams. -
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SecStAnT
Secondary Structure Analysis Tool for data selection and statistics
SecStAnT is a tool for the automatic creation of data-sets of structures from Protein Data Bank (PDB) with user-defined structural composition, and for the calculation of their internal variables distributions. SecStAnT is able to 1. Select from PDB data sets of structures based on user specified secondary structures (defined based on internal PDB classification or on DSSP) and/or sequence motives. 2. Build Data-sets at different levels of resolution (all atoms, only backbone, only Cα... -
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Component for structural analysis (graph-based concept and entity linking, segmentation and alignment of comparable texts)
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cd-hit
Ultrafast program for clustering large set of biological sequences
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences. CD-HIT was originally developed by Dr. Weizhong Li. CD-HIT is currently maintained by Dr. Li's group at UCSD (http://weizhong-lab.ucsd.edu/). CD-HIT is very fast and can handle extremely large databases. CD-HIT helps to significantly reduce the computational and manual efforts in many sequence analysis tasks and aids in understanding the data structure and correct the bias within a dataset... -
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SymSAP
SymSAP - A Symbolic Structural Analysis Program
SymSAP is a little program, written in Maxima language, to perform symbolic matrix analysis of structures. SymSAP aims to become a powerful didactic tool to help students learn structural analysis. -
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2P Toolbox
Two-Photon Data Analysis Toolbox
The 2P_Tools.jar is a series of hopefully useful Fiji Plugins to evaluate data acquired by two-photon imaging. It supports multiple features like conversion to normalized image stacks, preprocessing and image segmentation. -
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Spreadsheet Template for Structural Engineering (FEA Analysis for beams, trusses, 2D-frames). It makes possible to create your own parametric models.Templates for engineering calculation (fatigue, concrete plates, etc)
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NAL Numerical Analysis Library
NAL Numerical Analysis Library
NAL is a numerical analysis library made of template-based c++ files. The library can be compiled as a static library, dynamic library or linked directly with other programs. Each module may also be used as a stand-alone component. -
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Malimpa stands for MAtlab Library for IMage Processing and Analysis. It provides functions for 2D/3D grascale/color image creation, filtering, or measurement. It requires, and complements Matlab Image Processing Toolbox. Important notice: the project is now hosted in GitHub, https://github.com/dlegland/matImage
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WaveSorter
A powerful, versatile tool for offilne spike analysis and sorting
WaveSorter emphasizes dynamic visualization and versatility. Slider controls let the user select any coefficient or sample from any of several transforms, which can then be plotted to either axis of a 2D histogram (scatterplot). Within the waveform space, cursor-based controls let the user select subregions of the waveform space or individual waveforms to view. The user may cluster waveforms manually or via one of several popular clustering programs. The classification along with waveform... -
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MATLAB code to carry out the Structural Analysis of a 2-D continuous beam. Output includes Member end actions, restrained end reactions, deflection/rotation of free ends and support settling and/or support yielding can also be taken into account.
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jHepWork
jHepWork was a name of the DataMelt program in 2005-20013
jHepWork (2005-2013) was an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with the Jython (Python) scripting language. Currently the project is known under the name DataMelt (https://datamelt.org)