Search Results for "r package xmsannotator" - Page 3
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Showing 173 open source projects for "r package xmsannotator"
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rafah
Random Forest Assignment of Hosts
... models were built using the Ranger package in R. -
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Lockheed MAC 16 mini emulator
Emulator for Lockheed Electronics Company MAC-16 minicomputer (1969)
My first java program is an attempt to relive the days I spent maintaining a Lockheed Electronics Company minicomputer installation in an old electricity generating station. I had a little bit to do with this machine around 1978. There was two of them in a failover configuration with the standby machine available for program and data development. My goal is to get the development package called DEVSYS to run from a paper tape image that I have hung onto for all these years. The program has... -
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An R package to calculate spatial correlations in the context of Generalized Hierarchical Based Model approach. This project has migrated to https://github.com/CWFC-CCFB/GHMBSpatialCorr
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R-package to perform analysis of landmark based geometric morphometrics. Installation instructions: https://github.com/zarquon42b/Morpho/blob/master/README.md
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The Gapps Installer
GAPPS PACKAGE
https://chondoit.github.io/TheGappsInstaller/ Minimal GApps Package based on Pixel ones. >>>>> FEATURES <<<<< • Only ARM64 builds • MINI-ME Package (Less than Pico) • STANDARD Addon (for Nano like) • Basics Add-on (Dialer, Messages, Contacts, etc...) • GO Addon (Not Yet) • Simple Config Files • OK Google support (STANDARD ONLY) • Predefined System Components • Battery Optimizations + GMS Doze • Notifications working fine with GMS DOZE • Debloated permissions (WIP) • Debloated... -
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AnyStatus
Get your own sweet custom status for discord
Get your own sweet custom discord status! Paste your account token and your desired prefix in `config.json`. The file can be opened using the normal Notepad. You can find your token here. You need to have Python installed to use AnyStatus. Next, open a new terminal in the current folder and execute the following command: pip install -r requirements.txt Then open main.py and your custom status is ready :) Send `<prefix><activity> = <text>` in any discord channel to change your status... -
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xMSannotator
R package for network based annotation of metabolomics data
xMSannotator uses a multi-criteria scoring scheme and provides an interface to perform annotation of high-resolution mass spectral data using KEGG, HMDB, T3DB, LipidMaps, and selected data sources in ChemSpider. -
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Learn Julia the Hard Way
Learn Julia the hard way
The Julia base package is pretty big, although at the same time, there are lots of other packages around to expand it with. The result is that on the whole, it is impossible to give a thorough overview of all that Julia can do in just a few brief exercises. Therefore, I had to adopt a little 'bias', or 'slant' if you please, in deciding what to focus on and what to ignore. Julia is a technical computing language, although it does have the capabilities of any general-purpose language and you'd... -
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R Markdown Cookbook
R Markdown Cookbook
R Markdown Cookbook. A range of tips and tricks to make better use of R Markdown. R Markdown is a powerful tool for combining analysis and reporting into the same document. Since the birth of the rmarkdown package (Allaire, Xie, Dervieux, McPherson, et al. 2023) in early 2014, R Markdown has grown substantially from a package that supports a few output formats, to an extensive and diverse ecosystem that supports the creation of books, blogs, scientific articles, websites, and even resumes. -
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DETR
End-to-end object detection with transformers
PyTorch training code and pretrained models for DETR (DEtection TRansformer). We replace the full complex hand-crafted object detection pipeline with a Transformer, and match Faster R-CNN with a ResNet-50, obtaining 42 AP on COCO using half the computation power (FLOPs) and the same number of parameters. Inference in 50 lines of PyTorch. What it is. Unlike traditional computer vision techniques, DETR approaches object detection as a direct set prediction problem. It consists of a set-based... -
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TimeSlotTracker
Simple and useful time tracker
Simple and useful time tracker. Collects tasks and works (timeslots) in hierarchical tree. Has: reports (based on xslt templates), localization (7 langs), xml data format, ical, jnlp and JIRA (R) support. Runs on Windows, Mac and Linux. The code at GitHub: https://github.com/TimeSlotTracker/timeslottracker-desktop The git on Source forge is read only (replica). -
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AIO Boot
AIO Boot is a tool that can help you create a bootable USB with Grub2,
AIO Boot is a tool that can help you create a bootable USB with Grub2, Grub4dos, Syslinux, Clover and rEFInd. AIO Boot can boot Windows and most Linux distributions and boot via LAN using Tiny PXE Server. AIO Boot is constructed from a variety of sources, certainly still a lot of flaws, eager for sympathy. I would love to hear from you so that I can improve this tool better. -
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Strategems
Quantitative systematic trading strategy development and backtesting
Strategems is a Julia package aimed at simplifying and streamlining the process of developing, testing, and optimizing algorithmic/systematic trading strategies. This package is inspired in large part by the quantstrat1,2 package in R, adopting a similar general structure to the building blocks that make up a strategy. Given the highly iterative nature of event-driven trading strategy development, Julia's high-performance design (particularly in the context of loops) and straightforward syntax... -
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gostsum for Windows
OpenSSL utility to compute GOST/Streebog hashes
This package contain utilities to compute GOST hashsums: gostsum - computes GOST R 34.11-94 hash. gost12sum - computes GOST R 34.11-2012 hash. Written by Cryptocom LTD. See also: https://sourceforge.net/projects/openssl-for-windows/ Visit: http://albanese.atwebpages.com -
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Harmony Data Integration
Fast, sensitive and accurate integration of single-cell data
Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. Harmony has been tested on R versions =4. Please consult the DESCRIPTION file for more details on required R packages. Harmony has been tested on Linux, OS X, and Windows platforms. -
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GDINA Package for Cognitively Diagnostic
Package for Cognitively Diagnostic Analyses
Estimating G-DINA model and a variety of widely-used models subsumed by the G-DINA model, including the DINA model, DINO model, additive-CDM (A-CDM), linear logistic model (LLM), reduced reparametrized unified model (RRUM), multiple-strategy DINA model for dichotomous responses. Estimating models within the G-DINA model framework using user-specified design matrix and link functions. Estimating Bugs-DINA, DINO and G-DINA models for dichotomous responses. Estimating sequential G-DINA model... -
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spatialct
R package for measuring spatial concentration
R package for measuring spatial concentration according to the transportation problem approach by Ferrante et al. (2019). -
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posterdown
Use RMarkdown to generate PDF Conference Posters via HTML
Welcome to Posterdown! This is my attempt to provide a semi-smooth workflow for those who wish to take their RMarkdown skills to the conference world. Many creature comforts from RMarkdown are available in this package such as Markdown section notation, figure captioning, and even citations like this one (Allaire, Xie, McPherson, et al. 2018). The rest of this example poster will show how you can insert typical conference poster features into your own document. Posterdown was created as a proof... -
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MoPAC
The Modular Pipeline for the Analysis of CRISPR screens
To facilitate the comparison of gene essentialities in two or more cell samples, we propose MoPAC (Modular Pipeline for Analysis of CRISPR screens), a Shiny-driven interactive tool for differential essentiality analysis in CRISPR/Cas9 screens. For installation and usage instructions please refer to the wiki page. -
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rpackage conjurer
Synthetic data generation using R
Builds synthetic data applicable across multiple domains. This package also provides flexibility to control data distribution to make it relevant to many industry examples. -
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Open Intro Statistics
An open-source textbook written at the college level
... the "openintro" R package that is available from GitHub (https://github.com/OpenIntroOrg) if you would like to regenerate a figure. Other packages may also occasionally be required. -
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xMSanalyzer
An R package for metabolomics data extraction and quality assessment
xMSanalyzer comprises of utilities that can be classified into four main modules: 1) merging apLCMS or XCMS sample processing results from multiple sets of parameter settings, 2) evaluation of sample quality, feature consistency, and batch-effect, 3) feature matching, and 4) characterization of m/z using KEGG REST; 5) Batch-effect correction using ComBat -
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MANTIS R Package
Multi-locus ANTIgenic Simulator R-package for multi-strain pathogens
This repository contains the most updated code version of MANTIS, the Multi-locus ANTIgenic Simulator R-package. MANTIS is developed and maintained by the Evolutionary Ecology of Infectious Disease (EEID) research group at the Department of Zoology, University of Oxford, UK. For theoretical background please refer to 'MANTIS: an R package that simulates multilocus models of pathogen evolution' (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0598-9 OPEN ACCESS... -
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HBV interventions model
ODE HBV model and MCMC for fitting HBsAg, HBcAg and HBeAg data.
This code implements the MCMC and ordinary differential equation (ODE) model described in [1]. The core MCMC and ODE code is implemented in C/C++, and is wrapped with an R front end. This is not an R-package (although there are plans to extend the code and eventually make it into an R-package). Please read the PDF file supplied for further instructions on how to use this code. [1] HBV vaccination and PMTCT as elimination tools in the presence of HIV: insights from a clinical cohort...