This code implements the MCMC and ordinary differential equation (ODE) model described in [1]. The core MCMC and ODE code is implemented in C/C++, and is wrapped with an R front end. This is not an R-package (although there are plans to extend the code and eventually make it into an R-package).

Please read the PDF file supplied for further instructions on how to use this code.

[1] HBV vaccination and PMTCT as elimination tools in the presence of HIV: insights from a clinical cohort and dynamic model

https://bmcmedicine.biomedcentral.com/articles/10.1186/s12916-019-1269-x

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Model diagram. Example of default output

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2019-02-12
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