Showing 1621 open source projects for "algorithm"

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  • 1

    HipMer

    A High performance distributed memory assembler for big genomic data

    ...The single-genome assembly implementation is a high-performance parallelization and port of the Meraculous assembler (http://jgi.doe.gov/data-and-tools/meraculous/). The MetaHipMer extension is a recent addition to HipMer that is geared to large metagenomes and leverages iterative kmer sizes and a specialized scaffolding algorithm to produce increased contiguity and accuracy in metagenomic assemblies. It is able to reconstruct rRNA elements via a separate algorithm which relies on reference SSU and LSU Hidden Markov Models to help traverse the contig graph around ribosomal RNA regions. For more information and publications visit the HipMer Portal (http://portal.nersc.gov/project/hipmer/) MetaHipMer is one component of the ExaBiome project (https://sites.google.com/lbl.gov/exabiome/home), part of the Exascale Computing Project: https://www.exascaleproject.org/
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  • 2
    TSNE-CUDA

    TSNE-CUDA

    GPU Accelerated t-SNE for CUDA with Python bindings

    This repo is an optimized CUDA version of FIt-SNE algorithm with associated python modules. We find that our implementation of t-SNE can be up to 1200x faster than Sklearn, or up to 50x faster than Multicore-TSNE when used with the right GPU. You can install binaries with anaconda for CUDA version 10.1 and 10.2 using conda install tsnecuda -c conda-forge. Tsnecuda supports CUDA versions 9.0 and later through source installation, check out the wiki for up to date installation instructions. ...
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  • 3

    MScDB

    A Mass Spectrometry Centric Protein Sequence Database for Proteomics

    ...Therefore, we introduce an approach that structures the protein sequence space at the peptide level using theoretical and empirical information from large-scale proteomic data to generate a mass spectrometry centric protein sequence database (MScDB). The core modules of MScDB are an in-silico proteolytic digest and a peptide centric clustering algorithm that groups protein sequences that are indistinguishable by mass spectrometry.
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  • 4
    LeetCode Animation

    LeetCode Animation

    Demonstrate all the questions on LeetCode in the form of animation

    LeetCodeAnimation is an educational open source project by MisterBooo that visually demonstrates algorithm problems from LeetCode through animations. The goal of the project is to help learners understand complex algorithmic concepts intuitively by showing step-by-step animated explanations instead of relying solely on static code or text. Each animation corresponds to a specific problem and illustrates how data structures and algorithms operate dynamically, making it easier to grasp their underlying logic. ...
    Downloads: 2 This Week
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  • 5
    Basic Blind Chess

    Basic Blind Chess

    Blind Chess using Taiwan rule

    Blind Chess also known as "Dark Chess" (暗棋) or "Banqi" or Half Chess , is a two-player Chinese board game played on a 4x8 grid, or half of the xiangqi (Chinese Chess) board. This application is using Taiwan rule. AI is using basic minimax tree structure and some rules. Advanced algorithm such as Upper Confidence bounds applied to Trees and Monte Carlo Tree Search are NOT used. This app is single player vs computer only. For English user, Christakis Giorgios made Software Requirements Specification(pdf file), it will help anyone that downloads this application to understand basic blind chess and use it. You can download this pdf in Files->Specification folder.
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    Downloads: 2 This Week
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  • 6
    codeforces-go

    codeforces-go

    Solutions to Codeforces by Go

    Golang algorithm competition template library. Due to the complexity of algorithm knowledge points, it is necessary to classify the algorithms you have learned and the questions you have done. An algorithm template should cover the following points. Basic introduction to the algorithm (core idea, complexity, etc.) Reference links or book chapters (good material) Template code (can contain some comments, usage instructions) Template supplements (extra codes in common question types, modeling tips, etc.) ...
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  • 7
    Our goal is to create a pervasive platform for application engineers. Therefore we've created a modular and open framework architecture. It supports the engineers in the usage of artificial intelligence, biological behaviours and developing distributed systems in C++, C# and other languages. The basic modules of our framework can be easily used to develop also common applications for Windows, Mac-OSX and Linux platforms. It provides a hugh pool of standard functionality abstracting the...
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  • 8
    JQuickBase

    JQuickBase

    elementary database files for Java, B+ tree index files, ISAM

    ...Includes scalable database files w/ space recovery and variable record length, scalable B+Tree index files. Supports file backup and restore. Two package types: one with and one without strong file encryption using Twofish algorithm and state-of-the-art encryption technology.
    Downloads: 0 This Week
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  • 9

    LR Parser and Lexer Generators: Fortran

    LR parser generator and lexer generator for use in Fortran

    The generator for LR parsers uses Pager's method, augmented with Tom Pennello's Forward Move Algorithm for error recovery. The grammar specifies identifiers for nodes in the abstract syntax tree, and the identifiers for tokens. It generates Fortran declarations for tree node identifiers and named constants that represent the PDA. The lexer generator accepts regular expressions and generates a DFA. It generates Fortran declarations for character classes, recognized objects, named constants that represent the DFA. ...
    Downloads: 0 This Week
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  • 10
    Qbsolv

    Qbsolv

    A decomposing solver

    Qbsolv,a decomposing solver, finds a minimum value of a large quadratic unconstrained binary optimization (QUBO) problem by splitting it into pieces solved either via a D-Wave system or a classical tabu solver. (Note that qbsolv by default uses its internal classical solver. Access to a D-Wave system must be arranged separately.)
    Downloads: 0 This Week
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  • 11
    PhiSpy
    PhiSpy: A novel algorithm for finding prophages in microbial genomes that combines similarity-based and composition-based strategies
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  • 12
    labuladong

    labuladong

    labuladong algorithm

    Due to frequent malicious attacks on my algorithm website, this site opens multiple mirror sites at the same time. The experience of studying on this site will be better with my Chrome quiz plug-in. At present, this website can take you hand in hand to solve more than 200 algorithm problems, and it is constantly updated. All of them are based on force-related questions, covering all question types and skills.
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  • 13
    Data Structures and Algorithms in JS

    Data Structures and Algorithms in JS

    Data Structures and Algorithms explained and implemented in JavaScript

    Are you a JavaScript developer looking to improve your craft? Then, this algorithms book is for you. This material contains the fundamental concepts to move your career to the next level. You will be able to solve problems faster in your day-to-day work and ace technical job interviews. Simply put, algorithms are several steps to solve a specific problem (e.g., sort number, search value, transform data, etc.). Algorithms are an essential toolbox for every programmer. Even if you don't...
    Downloads: 1 This Week
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  • 14

    SYSU-OpenEdgeAI

    A public account displaying works from SYSU-OpenEdgeAI Club

    SYSU-OpenEdgeAI Club is a community of geeks who have innovative ideas as well as a great passion for Edge AI technologies. All of our works are open source, and we sincerely welcome all the Edge AI lovers to join us to solve problems and learn! Until 2020-12-27, we have already upload three projects: 1. ov_carplate.zip is a car plate recognition project based on Zedboard Zynq-7000. 2. mnist_hls.zip is a realization of Lenet for MNIST handwritten digit recognition using Vivado hls...
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  • 15
    TengineKit

    TengineKit

    TengineKit - Free, Fast, Easy, Real-Time Face Detection

    Free, Fast, Easy, Real-Time Face Detection & Face Landmarks & Face Attributes & Hand Detection & Hand Landmarks & Body Detection & Body Landmarks & Iris Landmarks & Yolov5 SDK On Mobile. TengineKit is an easy-to-integrate AI algorithm SDK. At present, it can run on various mobile phones at very low latency. We will continue to update this project for better results and better performance!
    Downloads: 7 This Week
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  • 16
    Anime4K

    Anime4K

    Anime4K is an open-source, high-quality anime upscaling algorithm

    SISR algorithm designed to work with Japanese animation and cartoons to generate high-resolution images from a low-resolution input.
    Downloads: 7 This Week
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  • 17

    ComputerGeneratedMusic

    Computer generated music

    Computer generated music currently using Rust and a towers of hanoi algorithm.
    Downloads: 0 This Week
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  • 18
    JavaScript MD5

    JavaScript MD5

    Compatible with server-side environments like node.js

    JavaScript-MD5 is a small, dependency-free implementation of the MD5 hashing algorithm written entirely in JavaScript, designed to run consistently across browsers, Node.js, and popular module loaders. It allows you to generate MD5 hashes from strings, arrays, ArrayBuffers, and other binary-like data types, making it useful for checksums, fingerprinting, and simple integrity checks on the client or server. The library is exposed as a plain function, so usage is as simple as calling md5(value) and receiving the 32-character hexadecimal hash. ...
    Downloads: 1 This Week
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  • 19

    SpatGRIS2

    Spatilization tool in in 2D and 3D

    The SpatGRIS2 is an external multichannel sound spatializer for different configurations of speakers in 2D or 3D. SpatGRIS2 may include up to 128 inputs and outputs. DOME, CUBE, BINAURAL and STEREO modes are available. SpatGRIS2 provides the new CUBE algorithm that allows the use of any speaker configuration. Warning: SpatGRIS2 is not compatible with Catalina and up. SpatGRIS3 is now available. SpatGRIS2 and ControlGRIS have been developed by the Groupe de Recherche en Immersion Spatiale (GRIS) directed by Robert Normandeau and based at the Faculty of Music at Université de Montréal. ...
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  • 20

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support...
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    Downloads: 116 This Week
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  • 21
    JSONCrush

    JSONCrush

    Compress JSON into URL friendly strings

    This simple system allows for excellent compression of uri encoded JSON strings using the JSCrush algorithm.
    Downloads: 0 This Week
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  • 22
    qiji-font

    qiji-font

    Typeface from Ming Dynasty woodblock printed books

    ...Download high-resolution PDFs and split pages into images. Manually lay a grid on top of each page to generate bounding boxes for characters (potentially replaceable by an automatic corner-detection algorithm). Generate a low-poly mask for each character on the grid, and save the thumbnails (using OpenCV). First, red channel is subtracted from the grayscale, in order to clean the annotations printed in red ink. Next, the image is thresholded and fed into the contour-tracing algorithm. A metric is then used to discard shapes that are unlikely to be part of the character in interest.
    Downloads: 3 This Week
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  • 23
    DreamTime

    DreamTime

    Use artificial intelligence to create images

    ...Open files or folders from your computer, you can also open files from Instagram and the web. Vitamined with editing tools for any case, you can also make the process fully automatic. Powerful working method that allows you to edit the algorithm step by step and obtain results that only a human could achieve.
    Downloads: 83 This Week
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  • 24
    gml4gtk

    gml4gtk

    small console GML or graphviz DOT graph viewer

    directed graph layout program for GML (Graph-Markup-Language) graph or partial graphviz DOT graph
    Downloads: 0 This Week
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  • 25
    Jasmine

    Jasmine

    Super fast Java aexpression and algorithm evaluator

    V1.0.1 fully compatible with PS2 and 3. Jasmine uses the ASM byte code manipulation library (http://asm.ow2.org/) to create Java byte code to evaluate numerical expressions and algorithms. Evaluation of compiled expressions is very fast, in most cases it is faster than the equivalent byte code produced by the Java compiler (javac).
    Downloads: 0 This Week
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