Search Results for "transcript"
Sort By:
Showing 59 open source projects for "transcript"
View related business solutions-
AI-generated apps that pass security reviewRetool lets you generate dashboards, admin panels, and workflows directly on your data. Type something like “Build me a revenue dashboard on my Stripe data” and get a working app with security, permissions, and compliance built in from day one. Whether on our cloud or self-hosted, create the internal software your team needs without compromising enterprise standards or control.
-
Our Free Plans just got better! | Auth0You asked, we delivered! Auth0 is excited to expand our Free and Paid plans to include more options so you can focus on building, deploying, and scaling applications without having to worry about your security. Auth0 now, thank yourself later.
-
1
Podcastfy.ai
Transforming Multimodal Content into Captivating Multilingual Audio
Podcastfy is an open-source Python package that transforms multi-modal content (text, images) into engaging, multi-lingual audio conversations using GenAI. Input content includes websites, PDFs, youtube videos as well as images. Unlike UI-based tools focused primarily on note-taking or research synthesis (e.g. NotebookLM), Podcastfy focuses on the programmatic and bespoke generation of engaging, conversational transcripts and audio from a multitude of multi-modal sources enabling... -
2
vcf2maf
Convert a VCF into a MAF
vcf2maf is a Perl-based tool developed by the Memorial Sloan Kettering Cancer Center to convert Variant Call Format (VCF) files into Mutation Annotation Format (MAF) files. This conversion standardizes variant annotations, facilitating downstream analyses in cancer genomics. -
3
Meetily
Privacy first, AI meeting assistant with 4x faster Parakeet/Whisper
...It’s built for organizations that want meeting intelligence without sending recordings or transcripts to third-party cloud services, which helps address compliance and data sovereignty requirements. The app supports live transcription with local model options (including Whisper- and Parakeet-based workflows) and presents the transcript as the meeting happens, making it useful both for note-taking and accessibility. After or during the session, it can produce structured, AI-generated summaries, and it’s designed to be flexible about where that summarization comes from, supporting local providers as well as external endpoints when allowed by policy. -
4
AutoCut
Cut videos with a text editor
...AutoCut supports multiple transcription backends, including Whisper and faster-whisper modes, allowing users to choose based on speed or accuracy needs. After editing the transcript text, the corresponding video clips are merged into the final output, and the tool also produces matching subtitle files. Its command-line interface can be integrated into scripts, making it suitable for automated workflows or batch processing. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
-
5
kallisto
Near-optimal RNA-Seq quantification
kallisto is a program for near-optimal quantification of transcript abundances from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the idea of using pseudoalignment to quickly determine reads and targets’ compatibility, with no need for alignment. According to benchmarks done on a Mac desktop computer, kallisto can quantify 30 million human bulk RNA-seq reads in less than 3 minutes with just the read sequences and a transcriptome index, that in itself can take more than 10 minutes to build. ... -
6
yt-fts
Search all of YouTube from the command line
yt-fts, short for YouTube Full Text Search, is an open-source command-line tool that enables users to search the spoken content of YouTube videos by indexing their subtitles. The program automatically downloads subtitles from a specified YouTube channel using the yt-dlp utility and stores them in a local SQLite database. Once indexed, users can perform full-text searches across all transcripts to quickly locate keywords or phrases mentioned within the videos. The tool returns search results... -
7
Petri
An alignment auditing agent capable of exploring alignment hypothesis
...Instead of building bespoke evals, Petri automatically generates audit environments from seed “special instructions,” orchestrates an auditor model to probe a target model, and simulates tool use and rollbacks to surface risky behaviors. Each interaction transcript is then scored by a judge model using a consistent rubric so results are comparable across runs and models. The system supports major model APIs and comes with starter seeds and judge dimensions, enabling minutes-to-insight workflows for questions like reward hacking, self-preservation, or eval awareness. Petri is designed for parallel exploration: it spins many audits in flight, aggregates findings, and highlights transcripts that deserve human review. -
8
claude-code-transcripts
Tools for publishing transcripts for Claude Code sessions
...The generated HTML includes interactive navigation and can optionally be published to GitHub Gists for sharing with collaborators or embedding in other documentation. It also supports including the raw session JSON alongside the transcript for forensic or archival purposes. -
9
MARS5
MARS5 speech model (TTS) from CAMB.AI
...To control speaker identity, MARS5 uses a short reference audio clip, typically between 2 and 12 seconds, from which it learns the voice characteristics. It supports two main inference modes: shallow clone, which is faster and only needs the reference audio, and deep clone, which additionally uses the transcript of the reference audio to increase similarity and naturalness at the cost of more computation. -
Gemini 3 and 200+ AI Models on One PlatformBuild generative AI apps with Vertex AI. Switch between models without switching platforms.
-
10
IsoQuant
Transcript discovery and quantification with long RNA reads
IsoQuant is a tool for the genome-based analysis of long RNA reads, such as PacBio or Oxford Nanopores. IsoQuant allows reconstructing and quantifying transcript models with high precision and decent recall. If the reference annotation is given, IsoQuant also assigns reads to the annotated isoforms based on their intron and exon structure. IsoQuant further performs annotated gene, isoform, exon, and intron quantification. If reads are grouped (e.g. according to a cell type), counts are reported according to the provided grouping. ... -
11
LARA is software for musical analysis using (new) scientific methods for analysis and visualization. LARA is part of the core research: “Interpretation and performance” of the HSLU – Musik (University of Applied Sciences Luzern – Music depart
-
12
CC2.TV / CC2 - Audio- und TV-Datenbank
Meta-Datenbank-Anwendung für die Audio- und TV-Sendungen des CC2.TV
Dieses Programm stellt eine Meta-Datenbank-Anwendung für die Audio- und Video-Sendungen des CC2.TV für GNU/Linux Systeme zur Verfügung. Es ermöglicht das Durchsuchen, Verwalten und Abspielen der umfangreichen Inhalte des CC2.TV-Audiocasts und -Videocasts. Ziel ist es, die über 3000 Audiocast-Themen und über 1000 Videocast-Themen, die sich auf Computerthemen, Technik und gesellschaftliche Aspekte konzentrieren, komfortabel zugänglich zu machen. Für die volle Funktionalität,... -
13
EvidentialGene
Evidence Directed Gene Construction for Eukaryotes
...The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification. All software developed for EvidentialGene is publicly available. See project wiki/blog for notes. -
14
footswitch2basic
Audio Transcription software for Linux (Vlc) with a foot pedal
Footswitch 2 (Basic) is a media player for transcribers on Linux. This version is a stripped down version of Footswitch2, containing only the absolute essentials for transcription. Written in python and using the python bindings for VLC it allows a transcriber to control the audio or video with a footpedal, and includes a set of macros that integrate into LibreOffice. This allows the transcriber to control the media player from within Libreoffice as well, making it useful for those who do... -
15
Fusion Detection Pipeline
Fusion gene detection pipeline bundled into a Singularity container.
...Arriba and FusionCatcher are utilized for fusion calling. Our filtering pipeline uses read counts generated by FeatureCounts and insert size estimation by Picard Tools for calculation of our filtering metrics: Fusion Transcript Score (FTS). Further filtering is realized by a custom blacklist, our Promiscuity Score (PS) and Robustness Score (RS). Identified fusion genes are reported with evidence levels based on our filtering. This pipeline has been developed and optimized in a study of 806 AML patient samples (https://doi.org/10.3324/haematol.2021.278436). -
16
myPower
Power monitoring program
myPower is a simple monitoring and logging program for the Raspberry Pi. It collects live power usage data from the LeChacal RPICT8 current HAT and CT Sensors. myPower logs the data to daily files calculating each day's KiloWatt Hour Usage. **myPower Remote App is Still In Development** The collected data can be viewed in a user friendly format with a line graph and pie chart. Monthly, Yearly, and lifetime KiloWatt Hour Usage can also be viewed and graphed using the "myPower Remote"... -
17
PyExfil
A Python Package for Data Exfiltration
PyExfil was born as a PoC and kind of a playground and grew to be something a bit more. In my eyes it’s still a messy PoC that needs a lot more work and testing to become stable. The purpose of PyExfil is to set as many exfiltrations, and now also communication, techniques that CAN be used by various threat actors/malware around to bypass various detection and mitigation tools and techniques. You can track changes at the official GitHub page. Putting it simply, it’s meant to be used as a... -
18
RSCH8360WK10
Transcript 1
Spirituality in simulation -
19
PPIXpress
specific protein interaction networks from transcript expression
...Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal alterations in protein connectivity caused by alternative splicing. The original publication can be found on https://bioinformatics.oxfordjournals.org/content/32/4/571 . -
20
PPLine
SNP calling, annotation and gene/transcripts expression quantification
PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of the results -
21
DualTranscriptDiscovery
Transcript-discovery approach for gene feature delimitation by RNA-seq
This project contains Python scripts usable for a dual transcript-discovery approach that improves the delimitation of gene features from RNA-seq data in the chicken model. Documentation: http://bio.biologists.org/content/biolopen/suppl/2018/01/17/bio.028498.DC1/BIO028498supp.pdf Citation: Orgeur M., Martens M., Börno S. T., Timmermann B., Duprez D. and Stricker S. (2018). A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken model. ... -
22
SlideShare Downloader
SlideShare download
This utility allow you to download any presentation from slideshare. Even if the author disabled it. -
23
MaxInfo
Transcriptome assembler for RNA-seq
MaxInfo is an automated transcript discovery and quantification software designing for high-throughput RNA sequencing (RNA-seq). Assembling transcripts from reads are challenging because of the unpredictable uncertainties arising from completing full genome structure with very partial observations. MaxInfo tackles this problem by explicitly reducing the inherent uncertainties in the biological system caused by missing information. -
24
MPprimer
a program for reliable multiplex PCR primer design
...It employs the widely used primer design program Primer3 and the primer specificity evaluation program MFEprimer to design and evaluate the candidate primers based on genomic or transcript DNA database, followed by careful examination to avoid primer dimerization. -
25
ViralFusionSeq [VFS]
Accurately discover viral integration events and fusion transcripts
VFS was fullly tested under Ubuntu/Debian system. ** Announcement 1**: VFS is superior to Virus-Clip. https://sourceforge.net/projects/viralfusionseq/files/VFS.vs.Virus-Clip.pdf/download As of 2016, VFS is the only viral integration tool available at NIH HPC system. https://hpc.nih.gov/apps/ViralFusionSeq/ ViralFusionSeq (VFS) is a versatile high-throughput sequencing (HTS) tool for discovering viral integration events and reconstruct fusion transcripts at single-base...
