Search Results for "simulation tools protein peptide"

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Showing 6 open source projects for "simulation tools protein peptide"

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  • 1
    BioNeMo

    BioNeMo

    BioNeMo Framework: For building and adapting AI models

    BioNeMo is an AI-powered framework developed by NVIDIA for protein and molecular generation using deep learning models. It provides researchers and developers with tools to design, analyze, and optimize biological molecules, aiding in drug discovery and synthetic biology applications.
    Downloads: 2 This Week
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  • 2
    The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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    Downloads: 43 This Week
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  • 3

    MScDB

    A Mass Spectrometry Centric Protein Sequence Database for Proteomics

    Protein sequence databases are indispensable tools for life science research including mass spectrometry (MS)-based proteomics. In current database construction processes, sequence similarity clustering is used to reduce redundancies in the source data. Albeit powerful, it ignores the peptide centric nature of proteomic data and the fact that MS is able to distinguish similar sequences.
    Downloads: 0 This Week
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  • 4

    ADFRsuite

    Automated docking software tools from the Sanner lab at Scripps

    the ADFRsuite provides a self contain python-based software environment with various tools for automated docking. visit ccsb.scripps.edu/adfr for more info
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    Downloads: 24 This Week
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  • 5

    Automated Proteomics Pipeline

    A front end for several popular open source proteomics tools

    APP automates and allows distributed computing of common proteomics tasks using a java-front end to provide both GUI and server parts. It is highly recommended for use with the Trans Proteomic Pipeline but this is not a requirement.
    Downloads: 0 This Week
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  • 6
    SCFIA is an important tools to Identify corresponding features (LC peaks registered by the same peptide) in multiple Liquid Chromatography/Mass Spectrometry (LC/MS) datasets in the analysis of complex peptide or protein mixtures.
    Downloads: 0 This Week
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