APP automates and allows distributed computing of common proteomics tasks using a java-front end to provide both GUI and server parts. It is highly recommended for use with the Trans Proteomic Pipeline but this is not a requirement.

Features

  • Please note that APP server demands Java 7 for monitoring of folders
  • Easily distribute and monitor execution of dozens of proteomics tools. Including: OMSSA,Myrimatch,X!Tandem, MSGF-+ Peptide, Protein and iProphet + more.
  • Add computers as nodes to a simple distributed cluster. Set up APP on an amazon image and easily scale your infrastructure within a few minutes.
  • Quick screencast of setup and task submission: http://www.youtube.com/watch?v=Vpzr8LAF5iY
  • Major update released, including new dokumentation, have a look. Linux installer and source to follow in a day or two.
  • Quick fix done to add missing unimod.xml file. For those that have had problems with tthe search plugin, please redownload.

Project Samples

Monitoring running tasks Creating a new pipeline Setting up a plugin Adding a plugin to a task Setting up database search parameters

Project Activity

See All Activity >

License

GNU General Public License version 2.0 (GPLv2)

Follow Automated Proteomics Pipeline

Automated Proteomics Pipeline Web Site

Other Useful Business Software
Go from Code to Production URL in Seconds Icon
Go from Code to Production URL in Seconds

Cloud Run deploys apps in any language instantly. Scales to zero. Pay only when code runs.

Skip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.
Try it free
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of Automated Proteomics Pipeline!

Additional Project Details

Registered

2012-07-04
Report inappropriate content