Search Results for "evolution simulation"
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Showing 76 open source projects for "evolution simulation"
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Thrive
The main repository for the development of the evolution game Thrive
Thrive is a free, open-source game about the evolution of life. From the lowly tidepools of your home planet, you will rise to cosmic dominance. At every step, powerful creation tools and deep simulation mechanics will aid your species’ development. Revolutionary Games is the open-source team of dedicated volunteers aiming to make Thrive a reality. Our team seeks to accomplish two major goals: create engaging, compelling gameplay that respects our players’ intelligence, and remain as accurate as possible in our depiction of known scientific theory without compromising the former. ... -
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Quantum++
Modern C++ quantum computing library
...Quantum++ is not restricted to qubit systems or specific quantum information processing tasks, being capable of simulating arbitrary quantum processes. The main design factors taken in consideration were ease of use, high portability, and high performance. The library's simulation capabilities are only restricted by the amount of available physical memory. On a typical machine (Intel i5 8Gb RAM) Quantum++ can successfully simulate the evolution of 25 qubits in a pure state or of 12 qubits in a mixed state reasonably fast. -
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GenX
X-Ray and Neutron Reflectivity Modeling
GenX is a scientific program to refine x-ray refelcetivity, neutron reflectivity and surface x-ray diffraction data using the differential evolution algorithm. GenX is very modular and highly extensible and can be used as a general fitting program. -
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syre
Synchronous Reluctance (machines) - evolution
SyR-e is a Matlab/Octave package developed to design, evaluate and optimize synchronous reluctance and permanent magnet machines. To perform Finite Element Analysis (FEA) SyR-e is linked to FEMM software, and the simulation process (model creation, pre-processing, post-processing) is automatic and completely controlled from SyR-e code. For the design section, SyR-e embeds automatic procedures based on design equations, minimal FEA simulations or multi-objective optimization algorithm... -
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OpenDSS-G
A graphical view of OpenDSS
OpenDSS-G (fomer DSSim-PC) is a new step in the evolution of simulation tools for planning and operations based in OpenDSS. This interface has adopted the functionalities of OpenDSS for making easier to the user to use the advance features of the platform. This version includes the parallel processing features included in OpenDSS. The interface is faster and by using graphical objects and forms the user can describe the power system, configure the processor utilization and many more advance features. ... -
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Nemo
Individual-based forward-time genetics simulation software
Nemo is an individual-based, forward-time, genetically explicit, and stochastic simulation software designed for the study of the evolution of life history and quantitative traits, and genetic markers under various types of selection, in a spatially explicit, metapopulation framework. -
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Biogenesis Color Mod
Mod for evolution simulation and artificial life program Biogenesis
You can download the Color Mod at the Biogenesis main site too (included in the main download now). You also find the sourcecode there. If you want to post a review, remember that this is only a modification, so comment on my changes, not on the simulation. Original project by Joan Queralt Molina: https://sourceforge.net/projects/biogenesis/ Includes Tyler Colemans "Features Mod": https://sourceforge.net/projects/biogenesisfeatu/ Biogenesis discussion... -
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Fosite - advection problem solver
numerical simulation code for solving transport equations in 1D/2D/3D
Fosite is a generic framework for the numerical solution of hyperbolic conservation laws in generalized orthogonal coordinates. Its main purpose is the simulation of compressible flows in accretion disks. The underlying numerical solution method belongs to the family of unsplit conservative finite volume TVD schemes. The method is 2nd order accurate in space and uses high order Runge-Kutta and multistep schemes for time evolution. In addition to the pure advection code several source terms have been implemented including viscous diffusion and gravitational acceleration. ... -
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Biogenesis is an artificial life program that simulates the processes involved in the evolution of organisms. It shows colored segment based organisms that mutate and evolve in a 2D environment. Biogenesis is based on Primordial Life.
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Matrix Product State (MPS) Simulations
Numerical routines for variational matrix product state simulations.
Open Source MPS (OSMPS) is a collection of numerical routines for performing tensor network algorithms to simulate entangled, 1D many-body quantum systems. Our applications reach from ground state and excited states for statics to the dynamics of time-dependent Hamiltonians. We offer various time evolution methods with an emphasis on the support of long-range interactions through the matrix product state formalism. For more algorithms, see the list of features below. Please cite "M. L.... -
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Easy Agent Simulation
Java-based agent simulation platform
EAS is a Java-based simulation platform, developed as part of a research project at the Karlsruhe Institute of Technology. It comes with a broad range of pre-developed simulation scenarios, ranging from virtual agents acting in abstract environments to agents with a spatial representation in 2D or 3D. It is built upon a novel architecture using a separate "plugin layer" to communicate between the simulation engine and the simulated model. This allows to flexibly add or remove... -
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C++QED
A framework for simulating open quantum dynamics
C++QED is an application-programming framework for simulating open quantum dynamics in general. It has demonstrated the ability to simulate full Master equation of up to several thousand, and quantum trajectories of up to several hundred thousand dimensions. The basic idea is to allow users to build arbitrarily complex interacting quantum systems out of free subsystems and interactions (elements), and simulate their time evolution with a number of available time-evolution... -
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CASUP
Cellular Automata library for SUPercomputers (CASUP)
CASUP is a Cellular Automata (CA) library for HPC and supercomputers. It can be used in materials science (microstructure evolution, grain coarsening, fracture etc.), physics (Ising magnetisation) and for many other CA. If you use the library, please reference it as: A. Shterenlikht, L. Margetts, Three-dimensional cellular automata modelling of cleavage propagation across crystal boundaries in polycrystalline microstructures, Proc. Roy. Soc. A 471:20150039, DOI:... -
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Evolution Strategies Starter
Code for the paper "Evolution Strategies.."
evolution-strategies-starter is an archived OpenAI research project that provides a distributed implementation of the algorithm described in the paper “Evolution Strategies as a Scalable Alternative to Reinforcement Learning” by Tim Salimans, Jonathan Ho, Xi Chen, and Ilya Sutskever. The repository demonstrates how to scale Evolution Strategies (ES) for reinforcement learning tasks using a master-worker architecture, where the master node broadcasts parameters to multiple workers, and the workers return performance results after evaluation. ... -
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The goal of the Elle Project is to provide a general purpose modelling environment for the simulation of rock microstructure evolution. The code is based around a unified description of 2D microstructure.
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Mirrors
arbitrary physical system simulator using artificial evolution
"Mirrors" is a simulation of an arbitrary physical system, where the goal is achieved using artificial evolution. The simulation can be used to demonstrate how random mutations manage to create an overall progress towards perfection. Running this requires java 8 installed and on path. https://github.com/JoonasVali/mirrors -
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GenCodeGenerator
C++ class to generate biologically plausible genetic codes
The "GeneticCode" C++ class is designed to generate versions of the genetic code subject to the requirements of the three major models of the genetic code origin and evolution (about these models see, e.g., Koonin & Novozhilov, 2009, IUBMB Life). This class was written specifically to perform statistical test for the paper Makukov & shCherbak (2017), but it might be used for a wider class of studies related to the genetic code. By default, the class "GeneticCode" generates... -
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Evolutionary relationship of species provides a great deal of information about their biochemical machinery. So many researchers focus on the research of constructing the phylogenetic tree. A phylogenetic tree is a representation of evolution, tree normally describe the evolution of the species where the sequence are found.A method called the neighbor-joining method is proposed for constructing phylogenetic trees from evolutionary distance data. The principle of this method is to find pairs of operational taxonomic units (OTUs [= neighbors]) that minimize the total branch length at each stage of clustering of OTUs starting with a star like tree. ...
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Opt4J
Modular Java framework for meta-heuristic optimization
Opt4J is an open source Java-based framework for evolutionary computation. It contains a set of (multi-objective) optimization algorithms such as evolutionary algorithms (including SPEA2 and NSGA2), differential evolution, particle swarm optimization, and simulated annealing. The benchmarks that are included comprise ZDT, DTLZ, WFG, and the knapsack problem. The goal of Opt4J is to simplify the evolutionary optimization of user-defined problems as well as the implementation of arbitrary... -
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Forward Simulation
A Wright-Fisher forward population genetics simulation.
The forward simulation code is a tool to model evolution of a population under the Wright-Fisher model. The code incorporates population expansion, bottleneck, speciation and migration. Several selection and fitness mechanisms are available: selective sweeps, foreground selection in one region with a distinct background selection in neighboring regions, epistasis, and truncation selection. -
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UBotSim
Robot Simulator for UBot Self-reconfigurable Robot
A simulation and evolution platform for UBot self-reconfigurable robot. More functions will come as soon as possible. Used libraries: MYGui3.2.0; OGRE1.8.0; Physx3.2; MTparser; GAlib;and other EAs including PSO, GEP etc. Precompiled SDK download site：http://dl.vmall.com/c07d135mza Operation System: Windows (Win 7 is prefered). Delveloping tool (IDE):Visual Studio 2010. -
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Krowface (Krowdix 3.0) is a simulation and implementation tool of social networks. To visualize and analyze the evolution of different social networks in real time. And the creation of a social network, configuring the parameters that define it. All this through a simple web interface and user friendly.
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Vegastrike evolved
evolution for vegastrike SpaceSim/Combat/Trade game
Vegastrike is an old open source game , cool but unfinished . And while there is still a community , the project is in orbit in a kinda space cimetery . The game can run under Windows,Linux ,Mac . BUT : It is complicated to work with the original SVN repositery , while the admins aren't reactive . So i decided to create that hub , with a trunk based upon the 0.5.1rc1 of Vegastrike . Let's Vegastrike be evolved , with new goals : _Dynamic Market system , better AI , mission and... -
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Biogenesis X Mod
Mod of the evolution simulation and artificial life program Biogenesis
This project is a modification of the original evolution simulation & artificial life project by Joan Queralt Molina: https://sourceforge.net/projects/biogenesis/ In both, the original project and this modification, 2-dimensional organisms consisting of line segments interact with each other, reproduce and evolve in time. Compared to the original project, this modification explores the following features: * alternative mutation mechanisms * an alternative stress-based aging mechanism It is based on the new_design branch of Biogenesis (https://sourceforge.net/p/biogenesis/git/ci/new_design/tree/), its source code can be obatained from http://sourceforge.net/p/biogenesisxmod/code/ci/xmod/tree/ If you want to post a review, remember that this is only a modification, so comment on my changes, not on the simulation. ... -
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ESTReMo
An evolutionary simulator of transcription regulatory networks
ESTReMo is a genetic algorithm-based simulator to explore the evolution of transcription factors and their binding motifs on realistic genomic backgrounds.