Search Results for "cross correlation"
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Showing 18 open source projects for "cross correlation"
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CausalityTools.jl
Algorithms for detecting associations, dynamical influences
CausalityTools.jl is a package for quantifying associations and dynamical coupling between datasets, independence testing, and causal inference. Association measures from conventional statistics, information theory, and dynamical systems theory, for example, distance correlation, mutual information, transfer entropy, convergent cross mapping and a lot more. A dedicated API for independence testing, which comes with automatic compatibility with every measure-estimator combination you can think of. For example, we offer the generic SurrogateTest, which is fully compatible with TimeseriesSurrogates.jl, and the LocalPermutationTest for conditional independence testing. -
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PetoronAI-Drug-Discovery
PetoronAI Drug Discovery Experiments
# PetoronAI Drug Discovery Benchmark https://github.com/01alekseev/PetoronAI PetoronAI was evaluated on the NCI-ALMANAC development dataset. • 2,225,137 experimental records • 602 experimentally measured drug pairs • Blind pair-level benchmark • 20×10 cross-validation • 99.5% validation coverage Validation: Correlation = 0.617327 MAE = 3.971799 Null model MAE = 4.656203 Sign accuracy = 64.69% Permutation p = 0.000100 Top HSA hypotheses: • Dactinomycin + Vinblastine sulfate (9.096) • Cabazitaxel + Vinblastine sulfate (8.224) • Mitoxantrone + Vinblastine sulfate (7.254) • Cabazitaxel + Mitoxantrone (7.128) • Dactinomycin + Daunorubicin HCl (6.965) Generated laboratory validation protocols (8×8 dose matrix, HSA, Bliss, Loewe, ZIP). ... -
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StatAnt
The package for statistical data analysis
Aspire to perfection. StatAnt is a standalone cross-platform application for statistical data analysis. Completely free. No donations required. Comes with absolutely no warranty. Rating: Everyone (All ages). MEDICAL DISCLAIMER: This software is not certified for use in healthcare and should not be used for diagnostic or treatment purposes. NOTICE FOR EU RESIDENTS: This software is NOT compliant with EU regulations, including GDPR and the AI Act. It is not intended for use within the EU.... -
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openSkyMatch
Matches OpenScience Observatories images with astronomical catalogs
openSkyMatch is a collection of Linux shell and Python scripts designed for the OpenScience Observatories program. It automates the identification and matching of detected celestial objects in locally captured FITS images with entries in large-scale sky catalogs, notably Pan-STARRS1 DR2 (II/389/ps1_dr2). The toolkit supports data preprocessing, coordinate correlation, and catalog-based validation of astronomical detections. All tools are open-source and optimized for reproducibility and... -
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Euler Pole Calculator (EPC)
A Matlab software to estimate Euler pole parameters
The EPC software calculates velocities for any points located on the earth’s surface given the Euler pole parameters and estimates the Euler pole parameters given the observed velocities of a set of sites located on a tectonic plate. Since version 2, the software is able to estimate or apply the Plate Translation Rates, as well. Please cite one of the following papers when you use the software: - Goudarzi, M A, Cocard, M, and Santerre, R. 2014."EPC: Matlab Software to Estimate Euler... -
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CT4AM
Tools for 3D image analysis of additively manufactured parts
CT4AM is a cross-platform toolkit for 3D-image processing in the domain of additive manufacturing for toolpath visualisation or correlation to tomographic data and related materials science. It is written in C++ and provides small, problem-specific applications for viewing, analysing and visualising of volumetric data from micro-CT scans with respect to the complex process parameters and characteristics of additive manufacturing. -
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PhoneInfoga
Information gathering framework for phone numbers
PhoneInfoga is an open-source intelligence framework focused on gathering and analyzing information related to international phone numbers. The tool aggregates data from multiple scanners and external services to provide contextual intelligence such as country, carrier, line type, and potential VoIP provider details. It is designed primarily for investigators, analysts, and security researchers who need structured phone-number reconnaissance rather than real-time tracking. PhoneInfoga... -
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Adherence terapeutic
Development of a scale that measures adherence in chronic patients
The different studies have shown the lack of a universal measurement system or gold standard, for which a scale has been developed using the most representative theoretical and empirical models, the objective is to validate the scale and verify the factors that influence. Validation study is carried out through a cross-sectional descriptive observational study of nursing consultations, of chronic patients, located in a hospital. Reliability of 0.846 is obtained from the scale under study, with an interclass correlation of 0.149. The scale is modified with nine items, obtaining a reliability of 0.750, and with an intraclass correlation of 0.835. ... -
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EMAP
A Cloud-Edge Framework for EEG Monitoring and Real-time Anomaly Pred.
...This work was published and presented at Design Automation Conference 2020 (DAC 2020). In case of usage please refer to: B. S. Prabakaran, A. G. Jiménez, G. M. Martínez, M. Shafique, “EMAP: A Cloud-Edge Hybrid Framework for EEG Monitoring and Cross-Correlation Based Real-time Anomaly Prediction”, IEEE/ACM 57th Design Automation Conference (DAC), July, 2020, (Accepted). -
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Volterra2.0
Volterra series Identification Tool
...This feature reduces the identification noise on lower order kernels and improve the "resolution" on higher order kernels. For reference see: Simone Orcioni. Improving the approximation ability of Volterra series identified with a cross-correlation method. DOI:10.1007/s11071-014-1631-7. pp.2861-2869. In NONLINEAR DYNAMICS - ISSN:0924-090X vol. 78 (4) 2014. -
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DE-HEoC
DE-based Weight Optimisation for Heterogeneous Ensemble
We propose the use of Differential Evolution algorithm for the weight adjustment of base classifiers used in weighted voting heterogeneous ensemble of classifier. Average Matthews Correlation Coefficient (MCC) score, calculated over 10-fold cross-validation, has been used as the measure of quality of an ensemble. DE/rand/1/bin algorithm has been utilised to maximize the average MCC score calculated using 10-fold cross-validation on training dataset. The voting weights of base classifiers are optimized for the heterogeneous ensemble of classifiers aiming to attain better generalization performances on testing datasets. -
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GPS Interactive Time Series Analysis
A software for processing and analyzing time series in Earth Science
Along with calculating basic statistics and quality parameters such as mean and variance, the soft-ware is capable of importing and visualizing different standard time series formats, determining and removing jumps and outliers, and makes numerical and publication quality graphical outputs. Bivariate statistical analysis (including correlation coefficient and linear regression) and time series analysis (including auto and cross-spectral analysis, wavelet power spectrum, spectrogram and periodicities) form the main analysis features of the software. -
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Advanced Normalization Tools ( ANTs )
Multidimensional image registration, segmentation and statistics
*** This is an archive only, please see https://github.com/ANTsX for this and other ANTsX tools *** Image registration with variable transformations (elastic, diffeomorphic, diffeomorphisms, unbiased) and similarity metrics (landmarks, cross-correlation, mutual information, etc). Image segmentation with priors & nonparametric, multivariate models. *** Current ANTs code, binaries (Mac, Windows, Linux) and support is hosted at Github *** https://github.com/ANTsX/ANTs Docker hub: https://hub.docker.com/u/antsx Older code and binaries remain available here on SourceForge (1.9x, pre 2014). ... -
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xPyder PyMOL Plugin
Analyze and visualize coupled residues and their networks in proteins
xPyder is a PyMOL plugin to analyze and visualize on the 3D structure dynamical cross-correlation matrices (DCCM), linear mutual information (LMI), communication propensities (CP), intra- and inter-molecular interactions (e.g. PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data using a modular, user-expandable plugin system that takes advantage of structural and dynamical information, contributing to bridge the gap between dynamical and mechanical properties at the molecular level. -
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ArchTEx
Accurate Extraction and Visualization of Next-Generation Sequence data
Quick extraction and visualization of NGS Data. Allows for calculation of strand cross-correlation to identify optimal short-read tag extension. Allows for extraction of data using a variety of data transformations. Performs genome-genome correlation of BAM files to assist in comparison of biological and technical replicates. http://bioinformatics.oxfordjournals.org/content/early/2012/02/02/bioinformatics.bts063.abstract -
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Tangerine is a protein sequence alignment tool based on cross-correlation. Its aim is to provide maximum sensitivity while being computationally efficient.
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A suite of programs for performing particle image velocimetry, a common technique in the field of fluid mechanics. The suite includes programs to perform cross-correlation, synthetic image generation, as well as graphical visualization.
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This Java native library wraps OpenCV (Computer Vision Lib.) function cvMatchTemplate and implements methods for utilities result visualization. It allows efficient images template matching using Normalized Cross-Correlation (NCC) and others algorithms.
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