Search Results for "input-leap" - Page 84
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Showing 3572 open source projects for "input-leap"
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Modular Single-set Enrichment Test
A randomization testing script for genetic enrichment analysis
...This added complexity can lead to technical difficulties. UPDATE: An MSET script ("mset_text.R") is now included in the MSET folder which allows users to manually designate input files via a text prompt. This bypasses the need for tcl/tk on OS X, although it is not as fast or easy to use. File names must be entered in quotations, including the .txt extension, and are case sensitive. -
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The software is developed for calculations of hierarchy big circuits by methods of the tensor analysis of networks and diakoptic. It is planned also to application for joint calculation of circuits and the fields presented by electrical equivalent circuits. For input of circuits editor KiCAD is used.
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docx2txt
Perl based utility to extract formatted text content from MS Docx file
Docx2txt is a Perl based command-line utility to convert (even corrupted) Microsoft docx documents to reasonably formatted text files, along with appropriate character conversions. Apart from Perl it also requires a command line unzipping program like unzip/7z/pkzipc/wzunzip. -
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FlashPunk
A free ActionScript 3 library designed for developing 2D Flash games
FlashPunk is an open-source 2D game engine for Flash, designed for rapid game prototyping and development in ActionScript 3. It offers a simple entity-component system, support for tilemaps, collision detection, and animation, making it ideal for creating pixel-art and arcade-style games. FlashPunk was a favorite among indie developers in the early 2010s due to its simplicity and performance. -
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pipelog
Pipe input to a file which can be rotated/cleared via signals.
...Without such an intermediate, replacing, moving or deleting the log would make it impossible to resume accumulating output because the process would continue to use a filehandle to an old inode; some applications (such as syslogd) implement signal handling themselves so that another utility (such as logrotate) can be used to move their log(s), and then signal the application to re-open — but this is often not the case. On receipt of SIGUSR1, pipelog will rotate the log file to log file .1, and move any existing .1 to .2, etc, while continuing to buffer input. On receipt of SIGUSR2, it will delete the current log file and open a new one with the same name, effectively clearing the contents. It can also execute an arbitrary process in between opening the new log and beginning to write to it, again while buffering input. -
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Bycom
Bycom can do methylcytosine calling (5mC calling) from BS-seq.
Bycom can do methylcytosine calling from BS-seq (WGBS and RRBS), and either unmapped reads (FASTQ) or mapped reads (SAM/BAM) could be permitted for the input data. Certain SNPs (C>A/G) can also be selected in the output. 1. There's no softwares or methods identify methylcytosines considering the cell heterozygosis caused by multicellular sequencing. Bycom introduced it along with the sequencing errors and unconverson rate based on the Bayesian model. 2. Several parameters in Bycom could be set as what the users want to, such as depth threshold, quality control value, conversion rate, processor number. 3. ... -
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Java address standardization API that utilizes google's geocoding service. It parses an input address, sends it to google geocode service via http and then parses the return result into an address object. You get a free geocoding service thanks to googl
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Balance Training Computer Game
Serious computer game for physical balance training.
Serious computer game for physical balance training with Microsoft Kinect input. Requires a Windows 7 operating system with a Kinect. Built with Unity3D and Zigfu ZDK. -
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span
A Software Power Analyzer
...On the other hand, we developed a light-weighted library, Safari( http://sourceforge.net/projects/mistsafari ) which is the original SPAN function APIs to profile an application. SPAN uses IPC as model input and generate power profile for the insrumented functions, e.g. to instrument the benchmark of IS in NPB benchmark suite, first, SPAN_initialize() is invoked. Then, use SPAN_start("function_name") right before the function entrance. Call SPAN_stop("function_name") after the function. Also, SPAN_stop() at the end. -
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ciGen
ciGen is a short C++ code to generate cohesive interface elements.
...This project provides a simple C++ code that reads a finite element mesh, modify it and generate cohesive interface elements where needed. It can read Gmsh (http://geuz.org/gmsh/) or ABAQUS input files and write the mesh to any format such as ABAQUS and jive (http://www.dynaflow.com/en_GB/jive.html). The code was written by VP Nguyen (google scholar link: http://scholar.google.com/citations?user=jCqqCAoAAAAJ&hl=en) when he was at TU Delft and the algorithm is described in the article VP Nguyen, "An open source program to generate zero-thickness cohesive interface elements", Advances in Engineering Software, 2014(74), 27--39. ... -
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datadensityplot
Creates a data density plot of a 2 dimensional data distribution.
...The program uses sum of reciprocal squared distance to calculate density at each point, with a smear factor to prevent points going to infinity. The smear factor also controls the amount of clustering. There are several options for colour output. Input is via a csv (comma-separated values) file. Now there's a nice GUI built in Baby X for Linux and Windows -
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A MATLAB toolbox for simulating the movement of the iRobot Create. Contains multiple GUIs for creating maps and other input, showing the movement of the Create, and replaying a previously saved session.
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Genome Microsatellite Analyzing Tool
GMATO : Microsatellite Analyzing Tool for Huge Genome at any size
...Genome-wide Microsatellite Analyzing Tool (GMATo) is a novel powerful program for faster SSR mining at any length, any size,and comprehensive statistical analysis at genome aspect, especially designed for huge genome based on Perl scripts. Only one input file is required which contains DNA sequences in raw fasta format and output files in tabular format list all SSR loci information and statistical distribution at four biologist interested classifications. GMATo also has easy and graphical user interface scripted in Java and command line interface in Perl, either running in Windows, Linux and Mac etc. platforms with easily customized parameters control for biologists and bio-informatician. ... -
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resParser
Command line scientific calculator
...It is implemented with QT for GUI and for useful classes like QString. In the begin it was just a tool for computation of resistors values. Very similar to Speed Crunch as features Features: * Command line input * Built-in functions (log, exp, sin, cos, ...) * User defined functions * Infinite number of variables * Specific functions for computation of resistors value (E12, E24) rounding, parallel computation, k = 000, M = 000000 * Store the status (hystory of the commands, variables status) between sessions This software is OPEN SOURCE and released under GPL license so you can feel FREE to use, copy, share, (but above all) to study, analyze and modify it as you like (within the terms of the license). -
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Arron-IMSA
Integrated Metagenomic Sequence Analysis for Next Gen Datasets
We present Integrated Metagenomic Sequence Analysis (IMSA), a flexible, fast, and robust computational analysis pipeline that is available for public use. IMSA takes input sequence from high throughput datasets and uses a user-defined host database to filter out host sequence. IMSA then aligns the filtered reads to a user-defined universal database to characterize exogenous reads within the host background. IMSA assigns a score to each node of the taxonomy based on read frequency, and can output this as a taxonomy report suitable for cluster analysis or as a taxonomy map (TaxMap). ... -
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OOPSGen
Object Oriented Parser Generator
The goal of this project is to create a simple and easy to use parser generator that will accept a textual grammar file as an input and output modularized classes representing a limited parser interface. Long term goals include a robust grammar file syntax, output suitable for multiple programming languages, and tools for better integrating compiler functionality, parse tree manipulation, and FSM based scanner generation. -
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Purpose-Data-Viewer
Data Viewer is a database and user interface design tool
Data Viewer is a database and user interface design tool , supported OS is windows XP/Vista/7(+MSYS+MINGW) or LINUX ,you can input,search,print your data , Data Viewer create UI by a text model file , including control item , it save data in standerd DBF file ,it have a lot examples , support link between database files , it can print data in order of a text model file , it support multiple users's operation in same time . -
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CoffeeScriptRedux
Rewrite of the CoffeeScript compiler with proper compiler design
CoffeeScriptRedux is a rewritten version of the CoffeeScript compiler with emphasis on compiler design principles, robustness, and extensibility—designed to be "complete enough to use for nearly every project." Before transitioning from Jeremy's compiler, see the intentional deviations from jashkenas/coffee-script wiki page. Complete enough to use for nearly every project. Proper compiler design principles and a focus on robustness and extensibility. -
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Kippo-Graph
Full featured script to visualize statistics from a Kippo SSH honeypot
...Kippo-Graph currently shows 24 charts, including top 10 passwords, top 10 usernames, top 10 username/password combos, success ratio, connections per IP, connections per country, probes per day, probes per week, ssh clients, top 10 overall input, top 10 successful input, top 10 failed input and many more. There are also geolocation data extracted and displayed with Google visualization technology using a Google Map, a Intensity Map, etc. Lastly, input-related data and statistics are also presented giving an overview of the action inside the system and there is live playback ability of captured sessions. -
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bash-
standard bash but supplied with a dry-run mode
...When a script is processed by bash in dry-run mode there is output to stdout the sequence of commands that bash determines to run, something like -x, but the commands are not in fact executed, as with -n If the output were to be captured as a script, that script itself could be run by a normal invocation of bash, giving the same result, output and side-effects, as the original script would give. If the captured script were executed in dry-run mode the output should be the same as the input. A typical use is to determine what a complicated script, like libtool, will end up doing in the particular situation where it is used. There is a scheme to determine which commands are dry-run (not all should be) and what to do when the behaviour of the script would depend on the output of commands that were never run. ... -
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Glitch Client
Source for the Flash-based Glitch client
Glitch-client is the source code for the original Flash-based client for Glitch, the MMO game developed by Tiny Speck. It includes the user interface, display logic, game logic client-side (in AS3), asset handling and communication with servers. The client handles rendering the game world, inventory, avatars, locations, games etc., via the Flash client. The client code was later released as part of the asset archive after the game shut down. Networking / protocol logic to sync with game... -
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DNase2Hotspots
This software identifies tag-enriched regions(hotspots) from DNase-seq
DNase2Hotspots is a software package for identifying tag-enriched genomic regions (hotspots) from the DNase-Seq genomic data. This program reads a BAM (Binary Alignment/Map) file or tab-delimited text files as input and produces a list of hotspot candidates and associated z-scores as output. Mappability profiles for the reference genome and genomic regions of repeat maskers are also required as input. -
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GLProbs
GLProbs: Aligning multiple sequences adaptively
GLProbs is a simple and effective approach to improve the accuracy of multiple sequence alignment. We use a natural measure to estimate the similarity of the input sequences, and based on this measure, we align the input sequences differently. To test the effectiveness of this approach, we have implemented a multiple sequence alignment tool called GLProbs and compared its performance with a dozen leading alignment tools on three benchmark alignment databases, and GLProbs’s alignments has the best scores in almost all testings. ... -
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Generates html form data suitable for a template engine based on an associative array. After submitting, the engine will apply filters and validate the input.
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Linux Guist - Multi Lingual OS for Asia
A Single Click Language Changer and Publishing System for Web and DTP
Linux Guist - is a Multi Lingual Live CD OS for most Asian Languages, with the ability to run of a CD & Old Hardware, with just 128 MB Memory, for DTP, Web Publishing & Data Entry purposes. This will help IT employers to take up Govt. Projects that require Data Collection, Entry & Publishing at a very very low cost, while providing Training & Job Opportunities to numerous students of these languages, in the various towns, of the country. Talk to your respective IT/HRD ministry to identify...
