Search Results for "cell" - Page 8
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Showing 551 open source projects for "cell"
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SCEO
Single Cell Event Ordering Algorithm
This is an implementation of the Single Cell Event Ordering algorithm that was described in J. De Bie et al., "Single cell sequencing reveals the origin and the order of mutation acquisition in T-cell acute lymphoblastic leukaemia". Usage: java -jar SCEO.jar input=input.txt output=output.txt N=n with input = input file containing tab delimited matrix with for each gene a (named) row and for each cell a (named) column with the values 1=event present, 0=event absent, -1=NA output = output file with an enumeration of the most possible orders of events, preceded by a value indicating the probability of this option. ... -
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Capsule Cell Tracker
A user-friendly GUI for cell tracking and force estimation.
...In present work we develop an interpolation formula for drag forces on capsule shaped cells near walls that can be used as a simple and accurate substitute for the complex computational fluid dynamic simulations otherwise required to determine fluid-cell interactions. Please refer to our home page or contact us for more information http://www.physics.umu.se/english/research/biological-physics/the-biophysics-and-biophotonics-group/ The software is related to the paper: 'A drag force interpolation model for capsule-shaped cells in fluid flows near a surface' Krister Wiklund, Hanqing Zhang, Tim Stangner, Bhupender Singh, Esther Bullitt, Magnus Andersson* Department of Physics, Umeå University, 901 87 Umeå, Sweden -
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GnuPlot Add-in for Excel
The power of GnuPlot combined with the ease of Excel
...GnuPlot scripts are stored in Excel along with the generated graphs and can be instantly edited and regenerated without leaving the Excel environment. Data can be read from Excel sheets by a cell range ("A1:C400") or using an Excel named range. For Excel 2010, 2013, and 2016, 32 and 64 bit. -
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Excel2LaTeX
The Excel add-in for creating LaTeX tables
Making tables in LaTeX can be tedious, especially if some columns are calculated. This converter allows you to write a table in Excel instead, and export the current selection as LaTeX markup which can be pasted into an existing LaTeX document, or exported to a file and included via the \input command. Known to be compatible with Windows Excel 2000–2016 (32-bit and 64-bit) and Mac Excel 2004, 2011, and 2016. May also be compatible with other versions that support .xla add-ins. Does not work... -
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GlycoPAT
Comprehensive, open-source tool for glycoproteomics MS data analysis
...More details are available at https://www.VirtualGlycome.org/glycopat Source code also available at https://github.com/kaichengub/GlycoPAT If you use this software please cite: Gang Liu, Kai Cheng, Chi Y. Lo, Jun Li, Jun Qu and Sriram Neelamegham. " A comprehensive, open-source platform for mass spectrometry based glycoproteomics data analysis", Molecular Cell Proteomics, 2017 Sep 8, in press. https://doi.org/10.1074/mcp.M117.068239 -
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TX-TL modeling toolbox
Modeling and analysis tools for the TX-TL cell-free expression system
This project contains tools for using the TX-TL cell-free expression system. These tools include component models for simulating and analyzing biomolecular circuits, as well tools for composing circuits and creating more complex systems. NOTE: This project has been shifted to GitHub: https://github.com/BuildACell/txtlsim -
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No need to write on the keyboard! Writing texts much faster and easier by talking to the new DocClerk program that converts text files. Dictate your text on your cell phone, translate DocClerk and write your computer. Installation guidelines 1. Download and start DocClerk from your computer. 2. Download and launch the DocCkerk mobile application on your Android smartphone. (soon IOS…) 3. Enter the pairing code Enter the matching code shown in the application on your computer by going to the “Pair” section on the phone. 4. ...
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Utility Cell Map
A Java API that processes a two dimensional array of Strings.
Cell Map - Just a simple java method that processes a two dimensional matrix o cells. Currently it only processes strings but more functionality will be added when the need arises. -
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DimensionalAnalysis
Performs dimensional analysis from cells in a spreadsheet.
...The general convention is to put variable names, values & formulas, and units in three columns. Make sure the names match the contents of the name cells. Use the names in the formulas, not the cell addresses. To use the Dimension Analysis tool, select and copy the cells, then paste them into the tool’s input text box. Requires Python 3 plus SymPy and mpmath packages. http://www.sympy.org http://mpmath.org/ -
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Excel workbook fixer
Some tools to help you fix Excel Workbooks
This workbook contains various tools you can use to fix errors and improve the performance of your Excel workbooks. There are two types of tools – ones which gathers information about your workbook and ones which make changes to your workbook. If a tool makes a change to your workbook, it will add a new sheet to the end of your workbook and call it --CHANGES--. All changes will be listed here. If a tool gathers some information about your workbook, it will add a new sheet to the end... -
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ngx-datatable
A feature-rich yet lightweight data-table crafted for Angular
...Left and Right Column Pinning. Row Detail View. Decoupled theme'ing with included Google Material theme. Light codebase / No external dependencies. AoT Compilation Support. Universal Support. Cell & Row Selection. -
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MOGEN
The software for modeling the 3D structure of a genome using Hi-C data
The software builds 3D models of chromosomes or genome given chromosomal contacts data such as Hi-C, TCC, 5C. MOGEN was tested on simulated datasets. Using real Hi-C data of a human cell line, MOGEN built models that are consistent with knowledge about the genome of the cell line. Detail on how to use it: https://github.com/BDM-Lab/MOGEN It is published in Bioinformatics: http://bioinformatics.oxfordjournals.org/content/32/9/1286 Bioinformatics, Data Mining, Machine Learning (BDM) Laboratory, Jianlin Cheng, PhD Department of Computer Science University of Missouri, Columbia Email: chengji@missouri.edu -
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Telegram Bot API. Receive SMS with Telegram App. Send SMS to the Telegram app from cell phone. Bot will be forwarding all incoming Text messages to your App channel. Telegram API bot Tutorial SendMessage https://www.youtube.com/watch?v=8TIbn3bax8s Facebook messenger bot tutorial: https://www.youtube.com/watch?v=V_ghKTcA39c http://aaronsmith-tech.blogspot.com/2017/04/telegram-bot-receive-sms-telegram-bot.html http://aaronsmith-tech.blogspot.com/2017/05/getupdates-updates-telegram-bot-without.html http://aaronsmith-tech.blogspot.com/2017/04/how-to-create-telegram-bot-without.html
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metasort
A metagenome assembler by reducing microbial community
...Here we present a novel experimental and bioinformatic framework, metaSort, for effective construction of bacterial genomes from metagenomic samples. MetaSort provides a sorted mini-metagenome approach based on flow cytometry and single-cell sequencing methodologies, and employs new computational algorithms to efficiently recover high-quality genomes from the sorted mini-metagenome by the complementary of the original metagenome. Through extensive evaluations on simulated dataset, salivary and gut microbiomes, we demonstrated that metaSort has an excellent and unbiased performance on genome recovery and assembly. -
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JavaMutex
Provides 100% pure Java mutual exclusion.
Freely redistributable open source 100% pure Java for mutual exclusion. Read-write and read-only reentrant lock, condition variable, atomic wraps for Boolean, Integer, Long, and Reference. Cell pool with optional locking, object exchanger, Intersect. -
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TSWeChat
A WeChat alternative. Written in Swift 5
TSWeChat - A WeChat alternative, updated to Swift 5. The cell image in TSChatImageCell is drawn by using a Mask Layer. The chat background can be changed freely so that UI will look perfect. Audio wav files can be automatically converted into amr files which facilitate file transfer to Android devices. Both of the two types of files have been cached. -
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Mobile Phone validation or verification. Detect country by phone number free PHP script. Phone validator by mobile number. You cant check mobile carrier, city or user ip, only country by phone number. Country code detector PHP by mobile phone number Check phone number location (Reverse Lookup) by International Area Codes. Do you want to know who is calling you? Find location by number who calls or texted you. Free PHP SCRIPT phone number lookup no charge ( only country). Number for SMS...
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CellPD
Cell Phenotype Digitizer
This is an open source project to estimate cell cycle and other parameters based upon experimental time course data. Navigate to Files-->CellPD-->[version]-->[Operating System] Each download contains CellPD's source code, a Python virtual environment, and a tutorial on how to use CellPD. Tutorial TL;DR: Save your data (using the provided template) in the same folder as CellPD, then double click on runCellPD. -
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DictionaryForMIDs
Dictionary for Mobile Information Devices and PCs
DictionaryForMIDs is an dictionary application for cell phones, tablets and PCs. The dictionary is completely installed on the device ("offline dictionary"), i.e. after installation there is no need for an internet connection. DictionaryForMIDs can be set up for any dictionary, for any language, or for any other lookup-purpose. The DfM-Creator tool is used to set up a dictionary for use with DictionaryForMIDs. -
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Virtual Cell
Former home of the Virtual Cell platform (VCell), see http://vcell.org
This project and all source code has moved to GitHub, see https://github.com/virtualcell -
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ROP : Read origin protocol
ROP is a computational protocol to discover the source of all reads
...The ROP accounts for 98.8% of all reads across poly(A) and ribo-depletion protocols, compared to 83.8% by conventional reference-based protocols. ROP profiles repeats, circRNAs, gene fusions, trans-splicing events, recombined B/T-cell receptor sequences and microbial communities. The ‘dumpster diving’ profile of unmapped reads output by our method is not limited to RNA-Seq technology and may be applied to whole-exome and whole-genome sequencing. For more details see: https://sergheimangul.wordpress.com/rop/ ROP Tutorial: https://github.com/smangul1/rop/wiki -
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MultiCellDS
MultiCellular Data Standards Project
...Our ultimate goal is to foster a community that develops user-friendly tools that can read, write, and recombine data into better simulations and analyses for multicellular biology and predictive medicine. As part of this effort, we are developing MultiCellDB: a repository for a curated libary of digital cell lines and peer-reviewed simulation and experimental data. A novel part of MultiCellDS is the digital cell line: a digital analogue of experimental cell lines that will help to collect biophysical cell line measurements coming from many research groups and make them readily accessible to an ecosystem of compatible computational models. ... -
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PC1Dmod
PC1Dmod is an updated version of the solar cell simulator PC1D
PC1Dmod is an updated version of the popular solar cell simulation tool PC1D: https://sourceforge.net/projects/pc1d/ PC1Dmod extends PC1D by (i) including Fermi–Dirac statistics, which can be relevant in regions of high doping, and (ii) adding advanced c-Si models for Auger recombination, band-gap narrowing, carrier mobility, band structure and more. On this page you can now download the executables with all necessary extra files and documentation (now set as the default download), as well as the source code. ... -
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experix laboratory control system
instrument control, data acquisition display and analysis
...Interfaces accessible via commands and scripts: file i/o modelled on stdio and stdlib; usb control and bulk transfers; socket operations; webcam; graphics via framebuffer. Applications (not all available yet for download) include: cell poker (like an atomic force microscope); tissue mechanical tester; fluorescence photobleaching; alternating laser excitation fluorescence; fluorescence intensity distribution analysis; iverilog simulation analysis. -
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TraceX
MatLab App for calculating fitting isotopic exchange profile data
...Requires MatLab image processing toolbox If you use this tool for you research, please cite my PhD thesis: Cooper, S. J. Quantifying the Transport Properties of Solid Oxide Fuel Cell Electrodes. (Imperial College London, 2015). @phdthesis{SJCooper2015, author = {Cooper, S. J.}, number = {November}, publisher = {Imperial College London}, school = {Imperial College London}, title = {{Quantifying the Transport Properties of Solid Oxide Fuel Cell Electrodes}}, year = {2015} }
