Showing 13 open source projects for "cell"

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  • 1
    Scanpy

    Scanpy

    Single-cell analysis in Python

    Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells.
    Downloads: 0 This Week
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  • 2
    marimo

    marimo

    A reactive notebook for Python

    ...You'll always be able to reproduce your collaborators' results. Notebooks are executed in a deterministic order, with no hidden state, delete a cell and marimo deletes its variables while updating affected cells.
    Downloads: 2 This Week
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  • 3
    JimuReport

    JimuReport

    Open source drag-and-drop reporting and dashboard builder platform

    JimuReport is an open source data visualization and reporting platform designed to help developers and organizations build reports, dashboards, and large screen data displays through a visual interface. It provides an online report designer that uses an Excel-like editing experience, allowing users to construct reports with drag-and-drop components and cell-based layouts. It focuses on simplifying complex report development by enabling visual configuration instead of manual coding. JimuReport supports traditional report generation, print templates, and modern dashboard visualizations for business intelligence scenarios. JimuReport also includes components for building interactive charts, data tables, and analytical displays that can be used in enterprise applications. ...
    Downloads: 4 This Week
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  • 4
    Phenalysis

    Phenalysis

    Analyze agronomic plant research plots in aerial orthomosaic images.

    A graphical user interface to import, analyze and export plots from orthomosaic images of agronomic trials. Please cite the following reference in your work if you use Phenalysis: Khan Z and Miklavcic SJ (2019) An Automatic Field Plot Extraction Method From Aerial Orthomosaic Images. Front. Plant Sci. 10:683. doi: https://doi.org/10.3389/fpls.2019.00683 This tool is being developed through the sponsorship of the Australian Research Council's Industrial Transformation Research Hub on...
    Downloads: 0 This Week
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  • 5
    Telegram Bot API. Receive SMS with Telegram App. Send SMS to the Telegram app from cell phone. Bot will be forwarding all incoming Text messages to your App channel. Telegram API bot Tutorial SendMessage https://www.youtube.com/watch?v=8TIbn3bax8s Facebook messenger bot tutorial: https://www.youtube.com/watch?v=V_ghKTcA39c http://aaronsmith-tech.blogspot.com/2017/04/telegram-bot-receive-sms-telegram-bot.html http://aaronsmith-tech.blogspot.com/2017/05/getupdates-updates-telegram-bot-without.html http://aaronsmith-tech.blogspot.com/2017/04/how-to-create-telegram-bot-without.html
    Downloads: 0 This Week
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  • 6

    Automatic cell lineage reconstruction

    Automatic segmentation and tracking for 3D time-lapse microscopy

    From Amat et al., Nature Methods, 2014*: "The comprehensive reconstruction of cell lineages in complex multicellular organisms is a central goal of developmental biology. We present an open-source computational framework for segmentation and tracking of cell nuclei with high accuracy and speed. We demonstrate its (1) generality, by reconstructing cell lineages in four-dimensional, terabyte-sized image data of fruit-fly, zebrafish and mouse embryos, acquired with three different types of fluorescence microscopes, (2) scalability, by analyzing advanced stages of development with up to 20,000 cells per time point, at 26,000 cells min-1 on a single computer workstation, and (3) ease of use, by adjusting only two parameters across all data sets and providing visualization and editing tools for efficient data curation. ...
    Downloads: 0 This Week
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  • 7
    CIV Toolkit is a collection of computational intelligence and voice processing algorithms implemented for Cell Broadband Engine processors. Algorithms are implemented in C.
    Downloads: 0 This Week
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  • 8
    iSnake aims to bring the fun and simplicity of snake game (popular among cell phone users) with some new features. It includes a computer controlled intelligent opponent and multiplayer feature.
    Downloads: 0 This Week
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  • 9
    A high-level model of the cortex region of the brain in C. The code has been optimized to run on IBM CELL processor for high performance computation
    Downloads: 0 This Week
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  • 10
    The Zeus-Framework is a C++ framework using the paradigm of Cell Computing Model for Linux and Windows. Implements biological behaviours (cloning, genetic algorithmes, ect.). Used for grid computing, distribute systems etc.
    Downloads: 0 This Week
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  • 11

    Pond Scum

    Evolution Simulator.

    An Evolution Simulator of Single Cells in a Pond. This shows a crosssection of water with sun shining from above. A single cell is dropped in and has various genes. The cells multipy and evolve. See Files above for download and screenshot.
    Downloads: 0 This Week
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  • 12
    The Aikernel is an intelligence server and cell runtime environment that uses natural language processing and other pattern matching with Activators, Contexts, Concepts to allow multi tasking between installed cells.
    Downloads: 0 This Week
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  • 13
    aVolve is an evolutionary/genetic algorithm designed to evolve single-cell organisms in a micro ecosystem. It currently uses the JGAP Genetic algorithm, but does include a primitive genetic algorithm written in Python.
    Downloads: 0 This Week
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