Search Results for "sequence scaffold, java" - Page 6
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Showing 213 open source projects for "sequence scaffold, java"
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Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.
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CloudBurst is a parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.
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Contemplate is a bioinformatics tool for finding cis-regulatory modules (CRMs) in noncoding genomic regions using comparative sequence data.
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Knime (http://www.knime.org) nodes for sequence bioinformatics. Sequime is an eclipse plug-in for the KNIME data mining platform, providing additional nodes for reading, processing and visualizing sequence information.
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GenoGUARD is a DNA sequence screening software that implements the best match method recommended by the federal government to detect the presence of biosecurity threats in synthetic DNA orders.
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"Ugo Capeto's Ear Training Lower Higher" is a java program that trains your ear to recognize if a note is lower or higher than the previous one in a two-note sequence. Extract rar archive file and double-click the jar file (needs java).
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TooRAW is a little app that takes a folder containing a PNG image sequence and merges it into a single RAW video stream. Built with Processing 1.2.1
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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JStreb0r an Application that helps you to teach vocabulary. You'll be able to create your own lists and save them in files. You can start a asking-run, which is a sequence that asks you all selected words. At the end, there will be a score.
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This educational project to show students how is operation are parsed in case of right to left or left to right with different precedence priority.
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A Java package that provides several computations related to the edit distance of strings. Other than the basic Levenshtein, this algorithm can rearange words when comparing. The class can also provide details of how words could be transformed.
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wizard4j offers a java engine that 'runs' flowcharts (written in xml). A 'flowchart run' creates a sequence of user interactions (java api, html forms, rs, ...).The result of a 'run' can be applied to template frameworks like Velocity or Freemarker
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Protein Data Bank transformed into an SQL database with a very powerful search engine and a rich web interface. The engine combines chemical, sequence and 3D structure searches. The interface provides statistics, sequence and 3D structure alignments.
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Graphical editor using HTML5 canvas for input of chemical structures, molecule interactions, as well as protein sequence and 3D structural motifs. Facilitates searches in chemo-informatics, bioinformatics and structural biology .
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REPEATS is a bioinformatics software designed to help biologists to analyze sequence - either nucleotide or protein - for interspersed repeats. It offers functionalities to manage sequence data, analyze and store search results for further analysis.
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helps you learn vocabulary with reference cards, interactive tests, and an auto complete homework helper, exploiting brush-teeth time and proven cognitive methods. A card has 7 new words, 7 from 4 days ago, 7 from a week ago, and 7 from a month ago.
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EMBOSS is a dynamic and comprehensive Open Source package for bioinformatics (DNA and protein sequence analysis, protein structure, phylogenetics, etc.). EMBOSS is written in C, also compatible with C++, and has a separate Java interface (Jemboss)
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ICE Cafe is Open sourse sequence cromatgram alginer and viewer. The first purpose of this sofware is to find a RNA Editing by Comparing Genomic sequence to RNA sequence, or by using the ICE method developed at Suzuki Lab,Dept Chem&Biotech Tokyo Univ
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This is a graphical editor and code generator for Live Sequence Charts (LSCs). The code generated follows a simple execution mechanism. It shows a possible execution path. We have added a new local action construct, i.e. a self method call.
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Application for cellphone and computer to easily transfer pressed keys on cell phone via bluetooth and perform predefined shortcuts or keys sequence on PC for them.
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A java tool for anytime and interactive sequence mining. Aims at providing users with a way of analyzing her activity traces and extract activity schemes from them.
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Tester2 is simple test framework for functional testing of server applications (j2ee: jms, ejb, tibco, oracle, file, custom). Its tests are command driven, does not need any knowledge of programming.
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Mad Math is a Math API for Java that is aimed at adding needed math functions and formulas that are not in the regular Java Math API, such as fibonacci sequence, is prime, area formulas, greatest common factor, least common multiple etc.
