Search Results for "detection" - Page 51
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Showing 1991 open source projects for "detection"
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MethylExtract
High-Quality methylation maps and SNV calling from BS-Seq experiments
MethylExtract is a user friendly tool to generate i) high quality, whole genome methylation maps and ii) to detect sequence variation within the same sample preparation. The program is implemented into a single script and takes into account all major error sources: sequencing errors, bisulfite failure, clonal reads and single nucleotide variants. MethylExtract detects variation (SNVs – Single Nucleotide Variation) in a similar way than VarScan, a very sensitive method extensively used in... -
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DCTFinder
Extract title and creation time from web page.
...However, getting the document creation time is a necessary step for allowing to apply temporal normalization systems to web pages. DCTFinder is a system that parses a web page and extracts from its content the title and the creation date of this web page. DCTFinder combines heuristic title detection, supervised learning with Conditional Random Fields (CRFs) for document date extraction, and rule-based creation time recognition. DCTFinder is released under CeCILL free software license agreement. The system is described in the following paper (see 'Files' section): Xavier Tannier. "Extracting News Web Page Creation Time with DCTFinder". ... -
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Graffy
Graph Library based on C++ making heavy use of templates and STL
Graffy is a open source Graph Library written completely in C++ in self contained fashion. Features: 1. Reading and Writing from multiple graph formats. 2. Basic Graph Traversal, Connected Components and Paths 3. Centrality Measures 4. Community Detection Algorithms both Global and Local and measures to evaluate community detection algorithms 5. Artificial Graph Generators -
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An extensible, real-time, 3D visualization, simulation, and game-design authoring tool. Integrates Java 3D and Eclipse RCP. Drag-&-Drop editing of a complex 3D scene graph. Fast world-building. Web delivery via Webstart or Applets.
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MRI-PDQ:Phase Detection & Quantification
Detect sphere-shaped paramagnetic deposits in MRI datasets
Moved to http://parkermills.github.io/MRI-PDQ/ -
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The 2DX Project
Java 2D graphics/utility library
The 2DX Project is an ongoing project aiming to provide powerful, versatile, and felxible tools for 2D graphics programming in Java. The 2DX-GL core library provides utilities for animation, geometry, basic physics, and more. The Snap2D game engine/library builds upon the 2DX-GL core library by adding features like 2D world management tools, a dedicated scripting language, and high level rendering via the user's choice of either OpenGL or Java2D (OpenGL recommended for high perormance... -
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Parapipe
A Perl tool for orthologous sequences detection across a genomes set
A Perl tool for orthologous sequences detection across a set of genomes. This tool iteratively launches Inparanoid (http://inparanoid.sbc.su.se/cgi-bin/index.cgi) and Multiparanoid (http://multiparanoid.sbc.su.se/) softwares on a set of genomes and outputs FASTA sequences of core, accessory and uniques genomes. -
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G2
A generic 2D engine for any kind of game
This game engine uses the power of C++, OpenGL, and OpenAL to provide highly-portable, object-oriented code for programming a video game. Rather than tailoring to a specific type of game, the engine focuses on the fundamental components. It covers audio, graphics, controls, and data flow. With G2, developers have everything they need to create a 2D game without the need of expensive SDKs. -
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Magnolya
De novo CNV detection by co-assembly
Magnolya enables copy number variation (CNV) detections without using a reference genome. Magnolya directly compares two next-generation sequencing datasets. -
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CAT Detect is a software tool for the detection of inconsistency within timelines of computer activity. It is an experimental digital forensic tool for use and improvement by digital forensic practitioners and researchers alike.
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Duplicate files util
Search and delete duplicate files.
...Utility searches for clones as a review in the list will be presented all clones branches or compare two branches, and selectively for comparison with the branch of the directory with options for rapid detection of directory clones when comparing branches or in the same branch. Search and clone detection is carried out by name, size, date, content, tags for MP3, limited by size and date, template. Checked control the amount of files in all kinds of search. There are the usual search files and search for MP3 tag, comparing directories. ... -
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HomSI
Homozygous Stretch Identifier from next-generation sequencing data
...The researchers typically use SNP arrays to determine the homozygous regions and then search for the disease gene by sequencing the genes within this candidate disease loci. Recently, the advent of next generation sequencing enables the concurrent identification of homozygous regions and the detection of mutations relevant for diagnosis, using data from a single sequencing experiment. In this respect, we have developed a novel tool that identifies homozygous regions using deep sequence data. Using *.vcf files as an input file, our program identifies the majo -
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Classycle tools analyse static class and package dependencies of Java applications or libraries. Main features: Cyclic dependency detection (beyond JDepend), XML report, checking layered architectures. The tools runs from command line and as Ant tasks.
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bWAPP
an extremely buggy web app !
bWAPP, or a buggy web application, is a free and open source deliberately insecure web application. bWAPP helps security enthusiasts, developers and students to discover and to prevent web vulnerabilities. bWAPP prepares one to conduct successful penetration testing and ethical hacking projects. What makes bWAPP so unique? Well, it has over 100 web bugs! It covers all major known web vulnerabilities, including all risks from the OWASP Top 10 project. The focus is not just on one specific... -
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LABjs
Loading And Blocking JavaScript
...LABjs embraces a “load groups, then wait” model that makes dependency management clear without a separate build step. It’s designed to work across a wide range of browsers, including older ones, which is why it relies on robust feature detection and time-tested loading techniques. The library is intentionally small and framework-agnostic, so it can be dropped into almost any stack to orchestrate client-side assets more predictably. -
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Live MP3/OGG/AAC Flash Player for Icecast and Shoutcast. It has some interesting and necessary features like reconnect on network errors to make sure users never get silence and cache management to avoid memory memory consumption. Works with Flash 10.1 and newer.
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Addons for IOSEC - DoS HTTP Security
IOSec Addons are enhancements for web security and crawler detection
IOSEC PHP HTTP FLOOD PROTECTION ADDONS IOSEC is a php component that allows you to simply block unwanted access to your webpage. if a bad crawler uses to much of your servers resources iosec can block that. IOSec Enhanced... -
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VirTools
a low frequency Virus Variant detection pipeline for Illumina data.
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RHAPIS
NIDS Simulator
RHAPIS is a network intrusion detection systems simulator through which you can make, detect and analyze threats virtually. -
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...The former module (Training module) enables user to develop a model trained on his/her own TB and nonTB chest radiographs. The user developed automated model could be used for detection of TB from CXR(s). User has also option to choose between Gist and PHOG features to be used in both training and prediction module. This TB-Xpredict software is extremely efficient and having a maximum prediction accuracy of 94.2% with sensitivity of 0.961 for Gist features.
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Angular Masonry
An AngularJS directive for Masonry
Angular‑Masonry is an AngularJS directive that seamlessly wraps Desandro’s Masonry layout library. It enables dynamic, Pinterest-style grid layouts in your AngularJS apps. Bricks automatically reposition as items load, with optional image‑loaded detection to prevent overlaps. It’s easily installed via npm or Bower and supports custom selectors and Masonry options. -
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A platform independent 2d game programming framework for c/c++ programmers with least possible dependencies for easy porting and with focus on easy api calls and the requirement of commercial programmers
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Penetration-Testing-Toolkit v1.0
A web interface for various penetration testing tools
Penetration-Testing-Toolkit is a web based project to automate Scanning a network,Exploring CMS, Generating Undectable metasploit payload, DNS-Queries, IP related informations, Information Gathering, Domain related info etc -
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QUDeX-MS
Hydrogen/deuterium exchange estimation for isotopic fine structure MS
Hydrogen-deuterium exchange coupled to mass spectrometry permits analysis of structural dynamics, stability, and molecular interactions of proteins. Resolving isotopic fine structure during mass spectrometry has been recently demonstrated to allow direct detection and quantification of deuterium incorporation distinct from peaks corresponding to non-deuterium incorporated natural abundance heavy isotopomers. Here, we present a graphical tool that allows for a rapid and automated estimation of deuterium incorporation from a spectrum with isotopic fine structure resolved. Given a peptide sequence or elemental formula, the distribution of deuterium-associated mass-to-charge ratios is calculated based on a particular charge state corresponding to the molecular species resolved in an input mass spectrum. ... -
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Plaggie1.1
Plaggie is a standalone open source plagiarism detection application
Plaggie is an standalone open source plagiarism detection application for Java programs. The original authors are Aleksi Ahtiainen and Mikko Rahikainen. The original version can be downloaded from the website: http://www.cs.hut.fi/Software/Plaggie/ We at Maynooth University have updated the original version with following changes. 1) Grouping of students with similar submission 2) Color coding matches of code for easy detection 3) Finding groups of cheaters.
