Parapipe

A Perl tool for orthologous sequences detection across a genomes set

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Last Update: 2014-11-14

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A Perl tool for orthologous sequences detection across a set of genomes. This tool iteratively launches Inparanoid (http://inparanoid.sbc.su.se/cgi-bin/index.cgi) and Multiparanoid (http://multiparanoid.sbc.su.se/) softwares on a set of genomes and outputs FASTA sequences of core, accessory and uniques genomes.

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2014-11-14

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$300 Free Credits to Build on Google Cloud

New customers can spin up VMs, build with AI, and query data at no cost.

Put your $300 in credit toward real workloads, then keep building with free monthly usage for 20+ products. No commitment and no charge until you upgrade.

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The GeneRFinder-Benchmark is a comprehensive benchmark data for gene prediction which is based on data of CAMI (Critical Assessment of Metagenome Interpretation) and contains labeled data from gene regions. The benchmark is made up of 9 datasets. For each one of them is provided: - List of names, taxonomy ID and taxonomic level of the genomes of the organisms that make up the dataset (genomes.csv) - Set of sequences extracted from the respective selected genomes (sequences.fasta) - Ground truth for each of the extracted ORFs (groundtruth.csv) For information about download, see the documentation.