Search Results for "binary analysis tool" - Page 41
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Showing 1961 open source projects for "binary analysis tool"
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serlogger
serial logging tool with time stamps and hotkey and automation support
a flexible serial logging tool, runs on GNU/Linux, which can be useful for timing analysis and logging capture of embedded system development. -
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APL@Voro
APL@Voro a tool for model bilayer simulation analysis.
APL@Voro is a program designed to aid in the analysis of lipid bilayer simulations carried out by gromacs. It calculates the area per lipid and the membrane thickness even for mixed bilayers. Colored Voronoi diagrams and different types of plots are presented in an interactive environment. -
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Telomerecat: The Telomere Computatioanl Analysis Tool Telomerecat allows you to generate average TL estimates for any high throughput paired end sequencing samples.
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HBS-tools
a set of tools for hairpin bisulfite-seq data analysis
The emerging genome-wide hairpin bisulfite sequencing technique facilitates the determination of DNA methylation fidelity and accurate methylation calling. Here we present HBS analyzer, the first command line based open-source tool to process genome-wide hairpin bisulfite sequencing data. It accepts Illumina paired-end sequencing reads as input, performs alignment to recover the original (pre-bisulfite-converted) DNA sequences and calls methylation status for cytosines on both DNA strands. -
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Sequencia
Protein Primary Sequnece Analysis
The current work is focused on the Software Development of an Offline Tool for “PRIMARY-SEQUENCE ANALYSIS” with JAVA and open source resources. SEQUENCIA Tool is an offline Tool of Primary Sequence Analysis, which is quite prevalent Topic for Researchers all over the world. Sequence Name, Sequence Length, Absorbance, Net charge, Iso electric charge, Amino acid composition, Amino acid classification, Aliphatic Index, Instability Index, Average Hydropathy etc are the Primary Sequence Analysis related Attributes for which this Tool exist. ... -
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kpackage4
Kpackage4 : a GUI tool to manage RPM, Debian ... packages
Kpackage4 is the port to KDE4 / Qt4 of a former project by Toivo Pedaste. This GUI can be used to install (upgrade included) or remove RPM, Debian, Slackware ... packages or to get detailed informations about installed packages such as dependencies, content of a given package, change log or scripts used during installation or removal. Through `Settings' menu, path to local (RPM) or remote (Debian) repositories can be setup for installing new packages. A `Management' mode is also... -
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CrashFix
Crash report analysis tool
Crash report analysis tool -
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must: A More Useful Syslog Test tool
A syslog message generator that replicates real syslog messages
Using templated message formats with customisable placeholders, run in configurable sequences that can selectively reuse data between steps, must allows more intelligent testing of syslog receivers with realistic data, as well as longer soak testing and stress testing. must was created to fill a gap found when trying to stress test Splunk as real, indexable and meaningful data was needed. must will (eventually) be provided as a standalone tool that uses XML configs (for quick use and... -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,... -
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font-spider
Smart webfont compression and format conversion tool
Font-spider is a compress tool for WebFont which can analyze your web-page intelligently to find the fonts out which have been used and then compress them. Font subsetter, our tool is based on HTML and CSS analysis and completely running in local so that. Font converter supports woff2, woff, eot, svg font format generation. -
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oovcde
C++ analysis IDE with auto class, sequence, zone, dependency, diagrams
...Downloades from either location work for now. The Oovcde project is a C++ IDE for Windows or Linux with an automated multi-tasking build system, cross compiler support, an analysis tool based on CLang that creates UML class, component, sequence as well as zone and portion diagrams from C++ source, static analysis and test coverage. The diagrams allow navigation through the source code, and can be edited manually and saved as .SVG files. It creates CMake files and can be built using Eclipse or CMake. Export to SQLite is supported. -
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EDM Calibration Baseline Fitting
EDMFit is an adjustment tool to estimate EDM calibration parameters.
An EDM calibration baseline is used to derive specific instrument errors of the electronic distance measurement (EDM) unit of a total station. EDMFit is a simple adjustment tool to estimate the EDM calibration parameters (addition constant and/or scale parameter). The adjustment process is according to ISO 17123-4. The parameters are checked for significance, to avoid an overestimation. Based on two classical hypothesis testing, EDMFit provides a reliable outlier detection. For... -
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FREJ stands for "Fuzzy Regular Expressions for Java" - it is a command-line tool and library which allow you easily compare strings with patterns disregarding nasty typos and considering several variants (like "Barack Obama", "B.H.Obama" etc.) Project sources are moved to github: https://github.com/RodionGork/FREJ
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Trowel - Sequencing Error Corrector
Error Correction Module for Illumina Sequencing Reads
Trowel is an error correction module for Illumina sequencing reads, which is based on the k-mer spectrum approach. This tool is the first tool that uses a quality threshold instead of a coverage cutoff in order to extract trusted k-mers. This tool guarantees high accuracy and speed. This tool has been developed since 21. Jan. 2013 by Euncheon Lim in Prof. Dr. Detlef Weigel's Lab in Max-Planck Institute for Developmental Biology. First of all, you have to install the exact version of... -
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PyLogAnalyser
A Python multiplatform tool to filter, colorise and analyse logs
...The final goal of this tool is to ameliorate reading long and difficult b/w logs, speed up the analysis and enhance day to day wearying activities. As common application, you can colorise adb logcat logs taking the example files and using them (and also, filter unnecessary lines). You can INSTALL it from PyPI: $ python -m pip install pyloganalyser -
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ParDRR-MPI
Parallel Duplicate Read Remover with MPI
ParDRR-MPI is a parallel tool to remove duplicate reads. Duplicate reads can be seen as identical or nearly identical sequences with some mismatches. This tool will let the users to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset (e.g., assemblies, mappings, etc.). The tool is implemented with MPI in order to exploit the parallel capabilities of multicore clusters. -
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Ones and Zeros
Binary clock with transparent background
Minimalistic binary clock with a transparent background, written in Python using the GTK3 tool kit. Add compiz window rules (or equivalent) for skipping the pager, sticking below, etc. if you'd like. -
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Extensible Log Analysis tool, featuring A Discrete Event Simulator which creates sample logs for evaluating the tool.
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GUAJE FUZZY
Free software for generating understandable and accurate fuzzy systems
GUAJE stands for Generating Understandable and Accurate fuzzy models in a Java Environment. Thus, it is a free software tool (licensed under GPL-v3) with the aim of supporting the design of interpretable and accurate fuzzy systems by means of combining several preexisting open source tools, taking profit from the main advantages of all of them. It is a user-friendly portable tool designed and developed in order to make easier knowledge extraction and representation for fuzzy systems, paying... -
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QuantitativeT2
Glioblastoma in mouse brain analyzed by QuantitativeT2
This video clip shows the analysis of a normal mouse brain by QuantitativeT2, a software tool recently developed by TS Ali (more information can be found at: Ali T, Bjarnason T, Senger DL, Dunn JF, Joseph JT, Mitchell J; Quantitativet2: interactive quantitative t2 mri witnessed in mouse glioblastoma. J. Med. Imag. 0001;2(3):036002. doi:10.1117/1.JMI.2.3.036002.). -
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PhPress
A LAMP Open-Source solution for Morphological Analysis of Newspapers
A tool to help archivists and historians to scan, stock, display and analyse collections of newspapers. -
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GenoSuite is a framework developed for proteogenomic analysis. An updated GenoSuite2 is just released where FDRScore (Jones et al. Proteomics 2009) based strategy is used to integrate results from multiple search algorithms. Prokaryotic Proteogenomic Tool(PPT) is developed as a part of GenoSuite framework. PPT is for finding novel translations in prokaryotic genomes and is dependent on Mass Spectrometry based proteomics data and related genome sequence.
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FMFilter
Fast Model Based Variant Filtering Tool
Filtering out the prominent portion through the excessive amount of information produced by next generation techniques is a challenging task. Current tools enable to analyze next generation sequencing data in various methods. However, there is still need for fast, easy to use and efficacious tools. We provide an efficient filtering tool for next generation sequencing data produced by genetic disease studies. FMFilter allows to choose one of the inheritance models (recessive, dominant,... -
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CoGA
R package for differential co-expression analysis
...It also compares the networks in terms of their gene centralities, clustering coefficients and shortest path lengths. In addition to the differential co-expression analyses, the tool provides graphical interfaces for network visualization, ranking of genes according to their "importance" in the network, and the standard single gene differential expression analysis. -
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LogDistiller is a logfile merge and sort tool. Log content is classified according to rules configured in an XML file. Classification results go into reports, which are published : simply stored in a file, sent by mail, or even added to a news feed.
