APL@Voro

APL@Voro is a program designed to aid in the analysis of lipid bilayer simulations carried out by gromacs. It calculates the area per lipid and the membrane thickness even for mixed bilayers. Colored Voronoi diagrams and different types of plots are presented in an interactive environment.

Features

Reading .pdb and .trr/xtc files creatd for lipid bilayers
Calculating Voronoi diagrams for different atom selections
Calculate the area per lipid and membrane thickness
Access bilayer features for single lipids
Generate 2D and 3D plots

Project Samples

Project Activity

See All Activity >

License

Creative Commons Attribution ShareAlike License V3.0

Follow APL@Voro

APL@Voro Web Site

Other Useful Business Software

Full-stack observability with actually useful AI | Grafana Cloud

Our generous forever free tier includes the full platform, including the AI Assistant, for 3 users with 10k metrics, 50GB logs, and 50GB traces.

Built on open standards like Prometheus and OpenTelemetry, Grafana Cloud includes Kubernetes Monitoring, Application Observability, Incident Response, plus the AI-powered Grafana Assistant. Get started with our generous free tier today.

Create free account

Rate This Project

User Reviews

Be the first to post a review of APL@Voro!

Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Education, Science/Research

User Interface

Programming Language

C++

Related Categories

C++ Molecular Mechanics Software

Registered

2012-08-27

Similar Business Software

Ascalaph Designer

Ascalaph Designer is a general-purpose program for molecular dynamic simulations. Under a single graphical environment are represented as their own implementation of molecular dynamics as well as the methods of classical and quantum mechanics of popular programs. Molecular geometry optimization...

See Software
YASARA

YASARA is a molecular graphics, modeling, and simulation program for Windows, Linux, MacOS, and Android developed in 1993, that finally makes it really easy to answer your questions. With an intuitive user interface, photorealistic graphics, and support for affordable virtual reality headsets,...

See Software
Promethium

Promethium is a GPU-powered chemistry simulation platform designed to accelerate drug and materials development by enabling faster and more accurate quantum chemistry calculations. Built from the ground up for NVIDIA datacenter GPUs like A100, it employs novel QC Ware streaming algorithms to...

See Software
SYNTHIA Retrosynthesis Software

Expert-coded by chemists and engineered by computer scientists, SYNTHIA™ Retrosynthesis Software enables scientists to quickly find and easily navigate innovative and novel pathways for novel and published target molecules. Quickly and efficiently scan hundreds of pathways to help you...

See Software
ChemDoodle

ChemDoodle 2D contains thousands of chemistry features, helping you produce the highest quality graphics and saving you hours of work. We spend a very long time scrutinizing the graphics output in ChemDoodle. The software automatically orients bonds in the correct directions, merges bond strokes...

See Software
ArgusLab

ArgusLab is a molecular modeling, graphics, and drug design program for Windows operating systems. It’s getting a little dated by now, but remains surprisingly popular. To date, there are more than 20,000 downloads. ArgusLab is freely licensed. You don’t need to sign anything. You can use as...

See Software