APL@Voro

APL@Voro is a program designed to aid in the analysis of lipid bilayer simulations carried out by gromacs. It calculates the area per lipid and the membrane thickness even for mixed bilayers. Colored Voronoi diagrams and different types of plots are presented in an interactive environment.

Features

Reading .pdb and .trr/xtc files creatd for lipid bilayers
Calculating Voronoi diagrams for different atom selections
Calculate the area per lipid and membrane thickness
Access bilayer features for single lipids
Generate 2D and 3D plots

Project Samples

Project Activity

See All Activity >

License

Creative Commons Attribution ShareAlike License V3.0

Follow APL@Voro

APL@Voro Web Site

Other Useful Business Software

Go from Code to Production URL in Seconds

Cloud Run deploys apps in any language instantly. Scales to zero. Pay only when code runs.

Skip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.

Try it free

Rate This Project

User Reviews

Be the first to post a review of APL@Voro!

Additional Project Details

Operating Systems

BSD, Linux

Intended Audience

Education, Science/Research

User Interface

Programming Language

C++

Related Categories

C++ Molecular Mechanics Software

Registered

2012-08-27

Similar Business Software

GROMACS

GROMACS is a free and open source suite for high-performance molecular dynamics and output analysis. It is a versatile package for simulating the Newtonian equations of motion for systems with hundreds to millions of particles, with a strong focus on materials modeling, biomolecular simulation,...

See Software
ESPResSo

ESPResSo, the Extensible Simulation Package for Research on Soft Matter, is a highly versatile open source simulation package for performing and analyzing scientific molecular dynamics and Monte Carlo many-particle simulations. It is designed as a universal tool for simulating a variety of soft...

See Software
NAMD

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. Based on Charm++ parallel objects, it scales from desktop and laptop computers to high-end parallel platforms, hundreds of cores for typical simulations, and beyond 500,000 cores...

See Software
Ascalaph Designer

Ascalaph Designer is a general-purpose program for molecular dynamic simulations. Under a single graphical environment are represented as their own implementation of molecular dynamics as well as the methods of classical and quantum mechanics of popular programs. Molecular geometry optimization...

See Software
YASARA

YASARA is a molecular graphics, modeling, and simulation program for Windows, Linux, MacOS, and Android developed in 1993, that finally makes it really easy to answer your questions. With an intuitive user interface, photorealistic graphics, and support for affordable virtual reality headsets,...

See Software
Promethium

Promethium is a GPU-powered chemistry simulation platform designed to accelerate drug and materials development by enabling faster and more accurate quantum chemistry calculations. Built from the ground up for NVIDIA datacenter GPUs like A100, it employs novel QC Ware streaming algorithms to...

See Software