Search Results for "patterns" - Page 35
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Showing 1248 open source projects for "patterns"
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ProGraphMSA
Graph-based multiple sequence alignment
ProGraphMSA is a state-of-the-art multiple sequence alignment tool which produces phylogenetically sensible gap patterns while maintaining robustness by allowing alternative splicings and errors in the branching pattern of the guide tree. This is achieved by incorporating a graph-based sequence representation as in POA and combines it with the advantages of the phylogeny-aware algorithm in Prank. Further, we account for variations in the substitution pattern by using estimated amino acid frequencies and by implementing context-specific profiles as in CS-Blast. ... -
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PARSEC - PAtteRn SEarch / Context
PARSEC - PAtteRn SEarch and Contextualization
...Most genomic sites are represented by short, degenerated motifs with a scattered distribution and sometimes with biological function (ex: regulation of gene expression, splicing patterns or epigenetics signals). These motifs are associated with a huge amount of noise and thus, the development of a computational platform for accurate detection of genomic sites requires the integration of various large-scale biological data in order to filter out false positives. PARSEC represents an intuitive, modular (easily extensible) and all-in-one solution for the efficient integration of lots of diverse genomic information in order to perform nonlinear localization and characterization of biological sites in a user-friendly environment. ... -
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AP_Finder
AP_Finder is a gui-based matlab script for finding action potentials
AP_Finder is a gui-based matlab script for finding action potentials (AP) in electrocorticograms using user-defined patterns. -
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EMGU Face Recognition
Using EMGU to perform Principle Component Analysis (PCA)
...The reason that face recognition is so popular is not only it’s real world application but also the common use of principle component analysis (PCA). PCA is an ideal method for recognising statistical patterns in data. The popularity of face recognition is the fact a user can apply a method easily and see if it is working without needing to know to much about how the process is working. -
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Javerology Decipher
Numerology software.
...It was written to serve as a fast deciphering tool for numerologists, occultists, mystics, scholars, curious people, mad folks and the like. With it it's possible to discover and analyse vibrational patterns in everything that was named by a human. -
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Deduced is used to edit and generate model classes. It also provides tools to implement code deduction patterns. It also simplifies data exchange and persistance.
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Munin Contrib
Contributed stuff for munin (plugins, tools, etc...)
...While contributions vary in maturity, most include usage notes and configuration examples so you can get a graph online with minimal trial and error. The repository also serves as a learning resource: you can crib patterns for performance tuning, environment detection, and Munin’s plugin protocol. For operators, it dramatically shortens the path between “I wish I could graph X” and a consistent time-series chart in production. -
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Project Chronos
Chronos
UPDATE, Check out our new website where we will host all future updates and improvements. The Sourceforge site will no longer be maintained and updated. www.TheChronosProject.com Project Chronos is an open source time lapse rail. It is a fully features system that offers the same level of control as professional systems costing thousands of dollars. It is also the most accurate time lapse system available capable of making accurate movements 1/125th the width of a human hair. And the... -
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FroZenLight connects simple line art and mathematics. The source of light can be positioned so that either symmetric reflection patterns or secret messages (Cryptography) are created. Example light patterns and math exercises for education are provided.
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Application to create 'electronic fluorescent pictographic' representations of gene expression patterns. Created at the Provart lab of the department of Cell & Systems Biology, University of Toronto.
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This is a set of Java APIs that handle common development problems. Provides wrappers to spring, log4J and support power software design patterns like decorators, worker threads, commands, etc.
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Penney Ante
It explains a phenomenon of a coin tossing game called Penney Ante
...Penney Ante is a coin tossing game invented in 1969 by a mathematician called Walter Penney. It is played by two players. Each player selects a pattern of three heads and tails. The two patterns must be different. The players then flip a fair coin repeatedly until one of the patterns appears. The winner is a person whose pattern appears first. Although initially the game appears to be fair, it is not in general. There is no best pattern that beats all others. The best we can do is let our opponent go first and then choose the best possible option that beats his particular pattern. ... -
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Coin Games
It explains a phenomenon of a coin tossing game called Penney Ante
...To do so we need to be able to define relations between each two patterns. And this is where the fun begins. See wiki for a full project description. -
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pyisocalc
Isotopic pattern calculator in python 2.x
This is an isotopic pattern calculator written in python. It depends on re, sys, numpy, operator, itertools, and matplotlib. -
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PercolaLand
PercolaLand 1.0 A tool to calculate landscapes percolation probability
PercolaLand software is a result implementing of new structural metric used to calculate percolation probability in binary landscapes. Much of the progress in spatial patterns and structure changes understanding have supported in percolation theory. Percolation theory aims to evaluate how connectivity is broken into spatially structured systems or quantifies the connectivity structure. Connectivity in this case refers spatial continuity of arrangements habitat areas. There are not a currently tools available to calculate percolation indices in landscapes files ascii.txt. ... -
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Sistema em php que visa prover uma forma simples de gerênciar banco de dados simples. Na medida do possível, utilizamos design patterns modernos, como TTD, DAO, usamos composição e interfaces tanto quanto pudemos. Produto 100% Paraense!!
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Testcard is a SDL/SDL_gfx based monitor test pattern (test card) generator. SMPTE and other test patterns are supported. Future plans include a very basic scripting capability to construct custom test patterns from built in primitives.
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TreeLiker
TreeLiker is a collection of fast algorithms for working with complex
...The data can, for example, describe large organic molecules such as proteins or groups of individuals such as social networks or predator-prey networks etc. The algorithms included in TreeLiker are unique in that, in principle, they are able to search given sets of relational patterns exhaustively, thus guaranteeing that if some good pattern capturing an important feature of the problem exists, it will be found. In experiments with real-life data, the algorithms were shown to be able to construct complete non-redundant sets of patterns for chemical datasets involving several thousands of molecules as well as for comparably large datasets from genomics or proteomics. ... -
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darks-orm
a simple, convenient, fast, powerful ORM data persistence layer.
Darks is a comprehensive type of lightweight ORM data persistence layer framework, integrated Hibernate "automation" ORM framework for the convenience, stability, as well as the Mybatis ORM framework "semi-automatic" efficient, high concurrency, set two ORM patterns as a whole.The framework to simplify the cumbersome configuration process, using Jython script language extensions, as a dynamic SQL language realization scheme.Construction of a highly efficient multi function domain data cache, and integrated EhCache third party data cache. -
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zopoclient
Scriptable GTK based Python MUD Client
...It is thus platform independent and provides a good looking interface in any system. Also, multiview scrolling is provided. Implemented features are triggers, macros and timers. Triggers and macros recognize patterns in the regular ways plus in an AL compatible mode. Actions can be defined by users as directly commands. Alternatively, in script mode, the action text is interpreted as Python code. The mud, match objects and defined variables are accessible from any feature. For the more advanced user, the implementation is small and extensible. ... -
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Ontology Design Patterns (ODPs) are well known and efficient modeling solutions for ontologies. This public catalog offers a collection of well documented and tested ODPs, including examples from the biological knowledge domain, implemented in OWL.
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jfilewatcher is 100% java file watcher service to monitor files and folders - with file name patterns. It polls file system to identify new, modified and deleted files. It keeps track all such changes and returns a new event context object when you ask for changes. Look for wiki page to see more details ...
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face cart is AJAX powered shopping cart presenting unique user experience.e-commerce system designed in the patterns of oscommerce,face cart is Java 5EE e-commerce solution. The shopping cart provides unmatchable speed.Supports all database servers.
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Black Hole Cortex
Sphere surface layers of visual cortex approach maximum info density
Near the surface (even horizon) of a black hole, there is maximum information density in units of squared plancks (and some translation to qubits). Similarly, our imagination is the set of all possible things we can draw onto our most dense layer of visual cortex in electricity patterns. Bigger layers have more neurons to handle those possibilities. A Black Hole Cortex is a kind of visual cortex that has density of neuron layers similar to density at various radius from a black hole. What we think our eyes see, the imagination, is the densest and smallest layer. SphereSurfaces outside it recursively have more neurons, more surface area, but less density since it has to eventually dimension-reduce to high level ideas, like there are 10000 Wikipedia page names that cover most parts of the world. ...
