Search Results for "caller" - Page 2
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Showing 82 open source projects for "caller"
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loggingproxy
A simple Proxy Servlet that forwards requests to configure urls.
Logging Proxy is a simple Proxy Servlet that forwards its request to one or more servers configured in the servlet's init parameters and optionally logs the request, response and headers as files. It has been tested on Tomcat 8. It is not an HTTP proxy which can be configured in a browser. The caller has to use the servlet's URL explicitly. It is intended for dev environments. Typical uses cases are to find out HTTP calls made in a SOAP invocation, fetch static resource from another domain for a local web application or proxy ajax calls. The latter 2 use cases can also be accomplished by setting up ProxyPass in Web Servers like Apache and nginx. -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
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W-Bus library and applications
W-Bus communication library
This is a small library that allows comunicating with a Webasto (tm) W-Bus capable car heating system. Runs on Personal Computers or for embedded devices (slim design). Easily portable. Includes a Heater manager, heater controller program and more. The GIT repository (CVS is deprecated) also includes a control unit application to control W-Bus capable devices, a W-Bus compatible heater unit firmware application and a heater simulator for testing purposes. Also, a serial port loop back... -
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...If you cannot install Torrent Suite in non-Ubuntu Linux servers, the AIRVF and VarScan2 pipeline can be a good alternative. But combination of SNVs from VarScan2 and indels from Torrent Variant Caller-Ion Reporter will demonstrate the best performance. It's fast.
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JFritz is a application written in Java, which makes it possible for AVM FRITZ!Box users to download the caller history from their box and manage it on their desktop pc.
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IDEM
Another IDE for c/c++ mfc learning
Light IDE based on Scintilla and MFC for study purpose with free libraries like astyle, ctags,SQLite ... and third party controls modified. The ide is still under construction. Open for little smart functionality: please add your comment for this. -
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Vecuum
Contamination-induced false variant caller
...Kim J et al, "Vecuum: identification and filtration of false somatic variants caused by recombinant vector contamination", Bioinformatics (2016): btw383. http://bioinformatics.oxfordjournals.org/content/early/2016/07/12/bioinformatics.btw383 Vecuum is a Java based variant caller designed for detecting contamination-induced point mutations from hybrid-capture-based genome sequencing data (e.g. WGS, WES, targeted capture, etc). Vecuum is specialized for identifying false variants caused by recombinant vector contamination, however, can be applied to detect spurious calls for various external contaminants such as xenogeneic genomes, mRNA (cDNA) libraries, or even pseudogenes. ... -
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EasyNcid
Auslesen der Anrufliste der EasyBox 802 (Arcor Vodafon)
NCID (Network Caller ID) for Vodafone EasyBox 802. The Easybox offers a feature to read out its Caller List. This App displays the list and starts a background service, that pops up incoming calls on the display while the App is inactive. A simple phone book is included to give a Name to the various numbers. -
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Crosscut is a set of high-quality and efficient modules handling NGS datasets in a population. Chronos is a highly sensitive and efficient multiple whole genome aligner in a population. Apollo is a structural variant caller in a population. Poseidon is a highly sensitive and efficient taxonomy classifier. All algorithms are developed since Feb. 6. 2015 by Euncheon Lim in Prof. Weigel's Lab in Max-Planck Institute for Developmental Biology.
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3Dec
Accurate base caller for Illumina non-pattern sequencing platform
Accurate base caller for Illumina non-pattern sequencing platform -
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Virmid
Virtual Microdissection for SNP calling
...Kim S et al, "Virmid: accurate detection of somatic mutations with sample impurity inference", Genome Biology 2013, 14:R90 http://genomebiology.com/2013/14/8/R90/abstract Virmid (Virtual Microdissection for SNP calling) is a Java based variant caller designed for disease-control matched samples. Virmid is also specialized for identifying potential within individual contamination where the disease sample cannot be purified enough. While the SNP calling rate is severely compromised with this heterogeneity, Virmid can uncover SNPs with low allele frequency by considering the level of contamination (alpha). ... -
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Recycler
Automatic recycling of IBM Domino Java objects
...On the other hand, libraries must never ever recycle any Domino object. As you probably know, every Domino object has no more than one Java object. And if a library function uses an object (i.e. a view) that is also used by the caller (or any other object), recycling this object will bring the caller in trouble! This makes recycling an insecure operation if you don't know exactly the current state of the application. Recycler removes this problems because it keeps track of all Domino objects and recycles those that are no longer used. -
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SoloDel
Somatic Low-frequent Deletion Caller Model
SoloDel (Somatic Low-frequent Deletion call model) is a Java based somatic deletion caller designed for whole-genome sequencing data from unmatched samples. SoloDel is specialized for identifying somatic deletions with frequently existing sampling issues : low mutational frequency in cell population and absence of the matched control samples. The important features of SoloDel are: • Estimation of mutational frequency in a mixed disease sample without matched control • Improved somatic deletion calling based on the probabilistic model with the parameter estimation -
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Sipura2NCID
SIPURA brand ATA to ncidd gateway
This is a SIPURA/LinkSys/Cisco brand ATA (analog telephone adapter) to NCIDD (network caller-ID daemon) gateway. sipura2ncid uses the ATA's debug message output to a syslog server. No need for packet snooping or network rearrangement. -
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...This is EventListener(like it is in c#) implemented in c++ .I'm using some c++11 features (like final), but you can easily remove them if you want. Check wiki-page to see usage. Need to be done: thread-safe; safe dispose of the caller-object(which invoking a delegate); improve event-caller; 19.12.14 - added some improvements
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LGML
LGPL GML parser
...The aim is to parse a GML document or fragment in order to get a WKT output. 2D and 3D inputs are both handled, but it is not permitted to have mixed geometries. The caller can choose if the input coordinates are parsed as X, Y, Z (if present) order, or Y, X, Z (if present) order. The willing of the project is to be a starting point useful for developers that need to parse GML objects in order to use them, for example, in the context of OGC catalogue projects. The library is compiled using Java 1.5 or 1.6. ... -
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LoDel
A probabilistic model for detecting low-frequent somatic deletion
LoDel is a Java based somatic deletion caller designed for whole-genome sequencing data from unmatched samples. LoDel is specialized for identifying somatic deletions with frequently existing sampling issues : low mutational frequency in cell population and absence of the matched control samples. The important features of LoDel are: •Estimation of accurate mutation frequency in a mixed disease sample •Improved somatic deletion calling based on the probabilistic model with the parameter estimation -
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basecv
BCV is DNA base caller with vocabulary
The Base Calling with Vocabulary (BCV) software package is intended for analysis of direct (population) sequencing chromatograms using known vocabulary sequences similar to the target DNA. The current version of BCV can only process chromatogram files obtained on Applied Biosystems capillary sequencing machines (ABIF file format). -
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Java Bingo Caller
Want to play Bingo? Use this simple program to call out the numbers!
A simple Java program used to play a full game of Bingo. -
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Relative Iterate
Deals with short coming of Boost's preprocessor ITERATE library.
...This is because the #include BOOST_PP_ITERATE() tries to include the file to iterate over from another file in another directory. Since it is in another directory different from the caller, this requires that the caller is located somewhere off of one of the include directories or it won't be found. Mostly this isn't a problem as you can usually add an additional include path to your compiler's command line. However, I must have found the only IDE on the planet that doesn't allow for adding command line switches to the compiler's command line. :/ Another reason that this could be useful is if you prefer to keep your header file includes relative to each other allowing for easily moving the related header files from one place to another. -
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qtOS
Tiny operating system for running HCFSM-based systems
...The system kernel is a task scheduler that runs processes' transitions at every cycle. Each task is activated either to be run in parallel (fork) with other active processes in the system or subordinated to the caller task, thus blocking it and creating a hierarchy of tasks. Execution of processes can be preemptive or non-preemptive and, among those with the same priority, a round-robin turn is performed. This operating system can be used to illustrate these concepts and can also be used to suport the execution of some embedded systems. -
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Bis-SNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Bis-SNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other bisulfite treated sequencing) to determine genotypes and methylation levels... -
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JExec
Incapsulate Java/oos features for easy usage from legacy or other lang
...Java programmers can take advantage from many features offered by the language itself as from that created by the open source comunity; but integration with other languages may be painfull, expecially from OS/lang like AS400/RPG. JEsec want to be a collection of encapsultated java/oos features directly java-callable or proxied by JEsec tcp-ip service or by JEsec client caller. Example of java/OOS features not easily usable in legacy systems are: - working with PDF or Office file - calling webservices (eg. COGNOS report) - working with email - working with differents RDBS N.B. legacy/AS400 integration may be done via ILE features or via RUNJAVA/RUNQSH CL or, the simplest way, via RUNRMTCMD
