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AIRVF was developed to increase accuracy of low-frequency variant calling. Our zip file contains programs for both Window and Linux. AIRVF demonstrated higher precision and sensitivity by accurately detecting SNVs with low VAF in Ion Torrent data. If you cannot install Torrent Suite in non-Ubuntu Linux servers, the AIRVF and VarScan2 pipeline can be a good alternative. But combination of SNVs from VarScan2 and indels from Torrent Variant Caller-Ion Reporter will demonstrate the best performance. It's fast.
Features
- somatic mutation
- low VAF
- Torrent Variant Caller
- VarScan2
- Ion Reporter
- LoFreq
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