Search Results for "gap" - Page 10
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Showing 317 open source projects for "gap"
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xPyder PyMOL Plugin
Analyze and visualize coupled residues and their networks in proteins
...PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data using a modular, user-expandable plugin system that takes advantage of structural and dynamical information, contributing to bridge the gap between dynamical and mechanical properties at the molecular level. -
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Multiple Dates Picker for jQuery UI
[Project moved to GitHub]
Extends jQuery UI's datepicker (calendar) allowing multiple dates and range selection and avoidance. -
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MARAGAP
MARAGAP - Modular Approach to Reference Assisted Genome Assembly Pi...
...MARAGAP uses an algorithmic approach to detect and correct inversions and deletions, a De-Bruijn graph based approach to infer the insertions, an affine-match affine-gap local alignment tool to estimate the locations of those insertions and a Bayesian estimation framework for SNPs. -
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ReSPARQL - RecSPARQL
SPARQL extension for recommendations
SPARQL, a declarative query language for querying RDF-graphs, supports retrieval of data exclusively based on facts; in contrast Recommender Systems aim to predict the taste of a user towards a set of not consumed items. However, predictions or suggestions are entities that cannot be explicitly retrieved. ReSPARQL is an extension of SPARQL that fills the gap between this two paradigms and enables a generic and flexible approach for recommendations over arbitrary RDF-graphs. It supports content-based, collaborative filtering and hybrid recommendations and allows both paradigms to gain benefit from each other. -
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NereCode
A stand-alone PHP-only library for parsing BBCode-like tags
Since BBCode requires much trouble to get it running, and not every project needs something so solid (sometimes it's just a admin posting engine, or a small microblogging engine with little or no user-content injections). NereCode comes to aim such gap. A minimally comprehensive syntax easily customizable. PHP only. Single file library. -
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jQuery.Turbolinks
Plugin for drop-in fix binded events problem caused by Turbolinks
jQuery.Turbolinks bridges the gap between jQuery plugins and Turbolinks 1–4. It ensures jQuery event handlers rebind properly on page change, solving issues with uninitialized bindings after Turbolinks page swaps. Though deprecated (incompatible with Turbolinks 5+), its simplicity makes it valuable for older Rails apps. -
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Gapfinder
Gapfinder is used to localize GAPS in DNA sequences
...However reordered contigs "connected" in scaffolds contain some gaps ( questionable strings of N letters created between ordered contigs ) that remain to be filled. GAPFINDER was created to help biologists in this last "gap filling" step. User can easily: - localize GAP's positions and save them as TABLE or as ANNOTATED GENBANK which can be loaded in genome browsers such as Artemis, etc. - extract GAP's neighbouring sequences, which is very helpful in primer walking and GAP filling process. Gapfinder was implemented in C++ with the use of Qt framework -
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brimbox
PHP/Postgres Web Database Interface
Brimbox is an easy to install web based relational database designed to bridge the gap between spreadsheets and custom designed databases. It is easy to customize and deploy, and is a tool for the PHP/Postgres/LAMP stack community when working with data sets or databases. -
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AnsiGL
A modern "graphics" API for text-based applications
...Many comparable APIs tend to either use video hardware, or are simply not as fully-featured as one might hope or expect, at least in the area of visual elements. AnsiGL can serve to bridge that gap easier, and since it "renders" to a std::string (or optionally, an ncurses WINDOW *), integration should be relatively easy with just about any project. Bindings to ncurses are provided to allow for rapid, fully-featured application development with old and familiar friends, along with AnsiGL. -
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FinIS
An in silico genome finishing tool
FinIS allows users to close gaps in the genome assembly as well as validate the genomic scaffold. It considers all gaps simultaneously to find gap sequences that best match the read data and to correctly resolve repeats. For further details see the FinIS webpage and the publication describing FinIS. -
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...There is still lack of tools that enable developers to compare different resource scheduling algorithms in IaaS regarding both computing servers and user workloads. To fill this gap in tools for evaluation and modeling of Cloud environments and applica- tions, we propose CloudSched. CloudSched can help developers identify and explore appropriate solutions considering different resource scheduling algorithms. Unlike traditional scheduling algorithms considering only one factor such as CPU, which can cause hotspots or bottlenecks in many cases, CloudSched treats multi-dimensional resource such as CPU, memoryt
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Scertify - TechDebt Community
Benchmark code quality and measure Technical Debt of projects in Sonar
...Though IT departments have matured these last 10 years and have now no doubt on the benefits of a continuous control of code quality, three major concerns were still remaining, without any tools able to effectively addressing these needs: * How to understand quality indicators, and how to compare them with the state of the art? * How to measure and manage the gap between the absolute quality level of a software, and a reasonable (reachable) target of quality? * What are the shortest and safe ways to achieve your quality goals? -
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HBase - Hannibal
Monitor and maintain HBase configured for manual splitting
...While HBase provides metrics to monitor overall cluster health via JMX or Ganglia, it lacks the ability to monitor single regions in an easy way. This information is essential when your cluster is configured for manual splits, especially when the data growth is not uniform. This tool tries to fill that gap by answering the following questions: How well are regions balanced over the cluster? How well are the regions split for each table? How do regions evolve over time? See https://github.com/sentric/hannibal -
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Big Sack
Big Sack: A lightweight Java Key/Value store with undo and disk cache.
Big Sack is a Java persistence mechanism that allows storage of key value pairs following the popular Big Data paradigms. Its a very simple and straightforward way to bridge the gap between in-memory data structures and long-term storage. It has the convenience of Java SDK TreeMap and TreeSet classes and is used the same easy way, but it includes rollback through undo logging to checkpoint data so it does not wind up in an unknown state regardless of failures. Data storage in the exabyte range is possible using filesystem and/or memory-mapped IO. ... -
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IMAGE stands for Iterative Mapping and Assembly for Gap Elimination. It is a software designed to close gaps in any draft assembly using Illumina paired end reads.
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The goal of this project is to combine different sources of information as well as methods to help in the process of gap closing / genome finishing in high throughput sequencing.
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MewsicPlayer
Player for files and Youtube Videos
Resulting from the poor youtube playlist feature this player tries to bridge the gap between classic audio file players and the huge amount of music videos on Youtube. -
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NGS can product a pair of reads which come from one original DNA fragment. If the internal gap can be correctly filled, we will get the full length sequence of original DNA fragment.
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...It incorporates de-novo repeat finding using RECON to avoid as much as possible designing primers in repetitive regions and offers the possibility to easily fine-tune the primer design options using primer3. It outputs the repeat, gap and primer annotations in gff2 and gff3 to easily load and visualize the results using tools like UGENE (recommended) or artemis.
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LARA
Lightweight Architecture for boundedly Rational Agents
...This requires a framework capable of handling high numbers of heterogeneous agents (several hundreds of thousands). LARA (Lightweight Architecture for boundedly Rational Agents) meets these requirements and fills the gap between frameworks without built-in psychological foundations and full-fledged cognitive architectures which are both not viable options in this context. LARA provides prefabricated components of an agent’s decision process like perception, memory, and different modes of decision making. These components are psychologically plausible, i.e. based on appropriate psychological results and theories. ... -
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ProGraphMSA
Graph-based multiple sequence alignment
ProGraphMSA is a state-of-the-art multiple sequence alignment tool which produces phylogenetically sensible gap patterns while maintaining robustness by allowing alternative splicings and errors in the branching pattern of the guide tree. This is achieved by incorporating a graph-based sequence representation as in POA and combines it with the advantages of the phylogeny-aware algorithm in Prank. Further, we account for variations in the substitution pattern by using estimated amino acid frequencies and by implementing context-specific profiles as in CS-Blast. ... -
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SpeakApps Tandem
Announcement: This project is moved to https://github.com/UOC/Tandem
...It will assign each student a role (i.e. student A, student B) and hand out to each student different contents belonging to same task in order to prompt authentic goal-oriented communication characteristic of fill-in-the-gap tasks. -
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Everpad
Evernote client well integrated with linux desktop
...It also supports note attachments, notebooks, and tags, so you can organize content in the same way you do on official Evernote clients. Because it plugs into the desktop search, you can surface notes alongside local files for faster retrieval. It was created to fill the gap for Linux users who didn’t have an official Evernote client but still wanted a smooth, native-like experience. -
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ATI_SCOPE
Open Source Traffic Control Software
...SCOPE incorporates an open source traffic signal control program developed by Advanced Technologies, Incorporated. SCOPE has pre-timed and actuated control modes. In has min recall, max recall, gap out, max gap, and presence modes that include advanced traffic control concepts. SCOPE interfaces with both NEMA-TS2 and Intelligent Transportation Systems (ITS) traffic cabinets. SCOPE executes under Linux or Windows. Currently it runs on a Linux based PC (used for concept and unit testing), a PowerPC prototype board with various I/O connectors (used for integration testing) and an Advanced Traffic Controller. ... -
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WPF Entity Validation Utils
DataAnnotations & IValidatableObject Support for WPF
WPF doesn't support DataAnnotations and IValidatableObject out of the box. This project fills this gap via adapters to the IDataErrorInfo interface which is supported by the WPF validation infrastructure. Your code becomes more DRY since DataAnnotations are supported by major MS technologies such as Entity Framework and ASP.NET MVC. At the top it defines a small internal DSL for defining validation rules that span multiple members (such as DateRange) that make those rules a no brainer. ...
