Search Results for "research database"
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Showing 230 open source projects for "research database"
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Basic Memory
Persistent AI memory using local Markdown knowledge graphs
Basic Memory is an open source knowledge system that turns AI conversations into persistent, structured knowledge you control. Instead of losing context after each chat, it stores information as simple Markdown files on your device, allowing both you and AI to read and write to the same knowledge base. It uses the Model Context Protocol (MCP) so compatible AI tools can access, update, and build on your notes across sessions. Basic Memory creates a semantic knowledge graph by linking related... -
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OP Vault
Give ChatGPT long-term memory using the OP Stack
OP Vault is an open-source system designed to give large language models long-term memory by enabling them to interact with a custom knowledge base built from user-provided documents. It combines a backend written in Go with a React frontend, allowing users to upload files such as PDFs, text documents, and books to create a searchable repository of information. The system uses vector databases like Pinecone alongside OpenAI models to index and retrieve relevant content, enabling precise... -
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UniTime is a comprehensive educational scheduling system that supports developing course and exam timetables, managing changes to these timetables, sharing rooms with other events, and scheduling students to individual classes. It is a distributed system that allows multiple university and departmental schedule managers to coordinate efforts to build and modify a schedule that meets their diverse organizational needs while allowing for minimization of student course conflicts. It can be used...
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open enventory
Electronic Laboratory Notebook, chemical inventory & more
Web-based Electronic Laboratory Notebook (ELN) with integrated Chemical Inventory by the group of Prof. Goossen (then TU Kaiserslautern, Germany), based on PHP 8+/MariaDB. Allows (sub-)structure search, reaction planning, management of spectra and literature. -
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FlightGear - Flight Simulator
FlightGear Flight Simulator: free open-source multiplatform flight sim
Founded in 1997, FlightGear is developed by a worldwide group of volunteers, brought together by a shared ambition to create the most realistic flight simulator possible that is free to use, modify and distribute. FlightGear is used all over the world by desktop flight simulator enthusiasts, for research in universities and for interactive exhibits in museums. FlightGear features more than 400 aircraft, a worldwide scenery database, a multi-player environment, detailed sky modelling, a flexible and open aircraft modelling system, varied networking options, multiple display support, a powerful scripting language and an open architecture. ... -
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AMBIT:Chemical Structure DB&Web Service
Chemical structures database & machine learning with web services API
AMBIT offers a cheminformatics data management for chemical substances, structures and nanomaterials. Flexible structure, similarity and study queries storage, descriptor calculation and predictive models building via REST web services.User interface for creating read across assessment and generating reports, aligned with regulatory and industrial requirements. Command line applications also available. Integration with third party tools and databases. -
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OpenClinic GA
Open Source Integrated Hospital Information Management System
OpenClinic GA is an open source integrated hospital information management system covering management of administrative, financial, clinical, lab, x-ray, pharmacy, meals distribution and other data. Extensive statistical and reporting capabilities. OpenClinic GA and OpenClinic GMAO are owned by Frank Verbeke, MD, PhD at Post-Factum BV (https://www.post-factum.be) -
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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A web based Metadata Catalog Server for data description and discovery. Supports both generic and geospatial data discovery. It implements international standards (e.g. ISO19115/19139/19119, ISO19115-3, DCAT-AP, CSW 2.0, OGC API Records). It originates from the United Nations and is used by many governments as geoportal software. Active development and discussion takes place on GitHub and OSGeo Discourse. You can also connect directly with the companies supporting the...
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GeigerLog
Python program for Geiger counters and Environmental Sensors
GeigerLog is a combination of data logger, presenter, and analyzer, and is now released in version 2.1! Based on Python (Version 3), it runs on Linux, Windows, Macs, Raspberry Pi, and other. GeigerLog is WiFi-enabled for servers and clients; it can be monitored by SmartPhone. Initially developed for Geiger counters, it is now a more universal tool, which equally well handles data like temperature, air-pressure, humidity, CO2. Continues to support Geiger counters like GQ Electronic's... -
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MathMod
MathMod is a mathematical modeling software
MathMod is a portable interactive plotting and graphing program for Windows, Linux, MacOSX and many other platforms. MathMod allows to plot 3D mathematical surfaces, described by implicit or parametric equations, and offers a very large database of model samples that can be generated with it. It's Free and Open Source. Change-log for MathMod-13.0 (15/11/2025) 1) Scripts generator to add thickness to iso/parametric surfaces 2) Undo/Redo commands for navigating through previous... -
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ABCD is a Free and Open Source Software designed to support knowledge communities. The software is targeting libraries of universities and research institutes as well as smaller public libraries, documentation centra, musea and archives.
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General Knowledge Machine Project
Intellect Modeling Kit: assisting research, diagnostics, consulting
We humans are bound by intellectual abilities. All knowledge is far beyond power of any person. The only way to apply knowledge is to build machines able to present it human way but not limited by volume. Intellect Modeling Kit (IMK) is intended to build knowledge machines (KM) assisting experts on the steps of activity: * Observation; * Producing propositions based on knowledge; * Elimination of impossible propositions; * Selection and verification of the most appropriate... -
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BIGSdb
Software for storing and analysing bacterial sequence data
The Bacterial Isolate Genome Sequence Database (BIGSdb) is a scalable, web-accessible database system designed to store and analyse linked phenotypic and genotypic information in a computationally efficient manner. Sequence data can range from single sequence reads to multiple contigs generated by whole genome sequencing technologies. The system incorporates the capacity to define and identify any number of loci and genetic variants at those loci within the stored nucleotide sequences. ... -
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FungiRegEx
FungiRegEx
This tool is a web-based search engine for regular expressions in the proteomes, all the information is obtained from the JGI (Joint Genome Institute) database through a scraper for all the available species; therefore this tool only considers fungi organisms. In this version, we use React JS in front-end and NodeJS + Express for back-end. Full Documentation Available on: https://victormiguelterronmacias.slite.page/p/J7BJU3hXhd72EJ/FungiRegEx-Software-documentation If you want to... -
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Develop an experimental framework for simulated multiplayer (model) railroads. It could be based on the VRML/X3D standard and it could use internal scripting with ECMAScript and MU systems that provide network sensor interfaces. Project Homepage: http://simulrr.sourceforge.net The SRR Framework has been used by the SrrTrains v0.01 project Demo 2012: https://www.youtube.com/watch?v=bHBwXmMfF1c Home of SrrTrains: https://lc-soc-lc.at/host
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bioweb
polyglot language framework to analyze genetic data
polyglot framework using Python/C++/JavaScript to fast develop applications to analyze biological sequences -
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Helpdezk
HelpDEZk is a powerfull software that manages requests/incidents.
HelpDEZk is a powerfull software that manages requests/incidents. It has all the needed requirements to an efficient workflow management of all processes involved in service execution. This control is done for internal demands and also for outsourced services. HelpDEZk can be used at any company’s area, serving as an support to the shared service center concept, beyond the ability to log all the processes and maintain the request’s history, it can pass it through many approval... -
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Web LP-CSIC/UAB
New Web for the LP-CSIC/UAB
New Web Home Page for the LP-CSIC/UAB -
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Unified Sessions Manager
Pioneering Private and Public Cloud Management since 2008
The UnifiedSessionsManager supports the integrated management of user sessions within Private-Clouds, comprising heterogeneous IT landscapes of various physical and virtual machines, hypervisor management, and virtual user sessions with remote desktops. Extracted documents see https://sourceforge.net/projects/ctys-doc. -
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Autshumato MTWS
Autshumato Machine Translation Web Service
Web service providing access to the Autshumato Machine Translation (MT) and other Moses Statistical MT systems. Functionality includes: - Automatic sentence, document, web page translation. - Improvements for translations. - Reviewer requests and interface to review improvements - Connection to the latest version of the Autshumato ITE, Post Edits done on inserted automatic translations are automatically submitted to the MTWS. - Administration interface to add users, reviewers and MT... -
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epidaurus
tumor epigenetic database
Epidaurus is a collection of epigenetic datasets including transcription factor ChIP-seq, histone ChIP-seq, DNase-seq, FAIRE-seq, DNA methylation, etc. It also includes commonly used genome features (GC content, conservation) and RNA-seq. A user friendly interface has been developed to interrogate and visuzlize these datasets. -
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Whitebeam Web Application Server
JavaScript/XML engine for Apache
Whitebeam is a complete rapid development Web application server integrating Apache, Posgresql, Mozilla's SpiderMonkey JavaScript engine with it's own powerful XML/XPath based secure application framework. -
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GCB_package
Stand-alone version of the Genome Complexity Browser
This application allows observing genome rearrangements in prokaryotic genomes. It provides rearrangements frequencies profiles and genomes graph representation. -
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TreeGraph
Information Manager(split/analyze/compare/combine).
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