Search Results for "java gui based sequencing format conversion tool"
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Showing 35 open source projects for "java gui based sequencing format conversion tool"
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NGSEP
NGSEP (Next Generation Sequencing Experience Platform)
NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering,... -
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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123FASTQ
An intuitive and efficient tool for preprocessing Illumina FASTQ reads
123FASTQ performs all the pre-processes of Illumina next-generation sequencing reads (FASTQ files) easier than ever. Download the quick user manual for the latest version: https://dl.adbioinformatics.net/NGSNeeds/myTools/123Fastq_v1.3_Manual.pdf Authors: Milad Eidi, Samaneh Abdolalizadeh, Mohammad Hossein Nassirpour Supervisors: Javad Zahiri, PhD University of California San Diego Masoud Garshasbi, PhD Tarbiat Modares University, Tehran, Iran If you use 123FASTQ,... -
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Piper
A distributed workflow engine
Piper is a multimedia-focused tool designed to simplify audio and video processing workflows through streamlined command execution. It acts as a wrapper around FFmpeg-like utilities, enabling users to build pipelines for media transformation with reduced complexity. The project emphasizes automation and reproducibility, allowing consistent handling of media tasks across environments. It supports chaining operations such as encoding, filtering, and conversion in a structured manner. Piper is... -
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quick-media
media(audio/image/qrcode/markdown/html/svg/png) support
quick-media is a lightweight multimedia processing toolkit designed to simplify common video and audio operations through streamlined command execution. It provides a wrapper around FFmpeg functionality, enabling users to perform tasks such as transcoding, clipping, and format conversion with simplified commands. The tool emphasizes ease of use while still allowing access to advanced encoding parameters when needed. It supports batch processing, making it efficient for handling multiple... -
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DataSink
Take a JDBC ResultSet and stream it in one of the supported formats
DataSink takes a JDBC ResultSet and streams it in in a format of your choice. You can as well zip the stream and send it over the network, if you want. DataSink currently implements the following table formats: DBF (the xBase file format), XHTML, and genericode. You can use it as an Ant task or directly from Java. -
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Korat2015
Enhanced Korat supports GUI, FSM, JUNG and JSON.
Korat is a tool for constraint-based generation of structurally complex test inputs for Java programs. Please see http://korat.sourceforge.net/index.html for more information on the Korat application. Korat 2015 includes the below enhancements to Korat: - Graphical User Interface using Java Swing - Graph Output Format using JUNG (Java Universal Network/Graph Framework) - Finite State Machine Domain - Graph Archival using JSON (JavaScript Object Notation) The Wiki page has... -
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RedisClient
Java Redis Client GUI Tool
This is a redis client GUI tool written based on Java SWT and Jedis. It's my objective to build the most convenient redis client GUI tool in the world. In the first place, it will facilitate in editing redis data, such as: add, update, delete, search, cut, copy, paste etc. -
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Java class libraries for structural biology development: includes protein format conversion tool, printf-based text formatting, Pred2ary secondary structure prediction, neural net library, Hooke-Jeeves global optimizer, and misc. math & statistics.
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IQuant
A pipeline for quantitative proteomics based upon isobaric tags
IQuant is an automated pipeline for quantitative proteomics based upon isobaric tags. It integrates post-processing tool of protein identification and advanced statistical algorithms to process the MS/MS signals generated from the peptides labeled by isobaric tags for quantification. IQuant can run from a graphical user interface (GUI) as well as a command-line interface and work with both Windows and Linux system. This website contains the IQuant software, an example data labeled by... -
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DbRevision project aimed to help developers implement automatic upgrade database structure from one reversion to other. DB structure described in independent, XML-based format. All upgrade actions described in XML too.
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Infofuze
Data migration/conversion library based on STX and XSLT transformation
Infofuze is a Java library and server application that can be used to transform and combine data from various sources into a specific XML or other text output format that can be stored or indexed. -
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QueLang
QueLang is a designing tool to use for Questionnaire Design.
This is the first implementation of QueLang. QueLang is a language I designed for Questionnaire Design and Implementation. This software can compile your code (written in .ql text files) into a special .qlc format (a kind of database). Then it can read those .qlc files to open them in viewer and export them to PDF format. It can be also used for exam and test designing! Tested on: -Linux Ubuntu 12.04 -Windows 7 64-bit QueLang can run by double clicking the .jar (or .exe)... -
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Swing Artist
Mini Java IDE and Swing builder
The aim of this project is to build an IDE for Java language which can be used to develop GUI based applications easily without knowing about the GUI components in detail. The idea is to enable users to make GUI as if they are using paint application to draw a design and later generating the code for it. The project also includes a built in Code Editor for editing Java applications. -
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Large Text File converter
Java Based Heavy-duty utilitity to process large delimited text files
TextZilla is a Multithreaded Java utility which can process huge size delimited text files to extract, convert, encode, decode, encrypt/decrypt text data from source and write it in desired output file or files. It provides fully extensible framework based on which Java classes can be created, for example it currently has MD5 conversion capability, based on same design classes for 3DES ,AES or any other Algo can be created. -
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BAMStats is a GUI desktop tool for calculating and displaying metrics to assess the success of Next Generation Sequencing mapping tools. BAMstats is written in Java and based around the Picard API.
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Info Transformer is a powerful utility to maintain the information in spite of data format and storage. There are lots of high speed functions for common and special data processings. Extract, transfer, load, convert, update, match, remove and so on.
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This is the new netbeans based RCP release! 0.8.5 beta. This tool provides an intuitive gui for microarray analysis. See here : http://www.pharma.uni-bonn.de/www/mart
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cobol2j reads or writes COBOL or RPG data files imported from mainframes, AS/400 or Baby/36 environment. Packed decimal, zoned or packed date fields decoding included. EBCDIC conversion. ETL ISAM data to any other platform. PC Cobol ( ASCII ) supported.
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A software to store, (PUT) meteorological data from complex free form text format to databases and and GET stored (and already loaded) data from databases using OPeNDAP protocol. Written using Java6, XSD, and C++. It support OPeNDAP clients thanks to
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A GUI-based text annotation tool for creating and visualizing annotations. It uses a flexible stand-off XML data format, and has advanced and customizable methods for information and relation visualization.
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The goal of the OSM2PostGIS project is to develop an OpenStreetMap data processor that can import any amount of .osm XML data into a PostGIS database, and produce evaluated navigation network topologies to support routing.
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PDPM is an automated time tracking & productivity measurement tool for PC/Laptop. The tool runs in the background logging usage statistics and prepares daily reports. Please see more details at http://pdpm.sourceforge.net.
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Ky eshte nje projekt i HAPUR/FALAS per publikun Shqip-foles i cili permban nje seri Video-Kursesh, Udhezime, dhe Shembuj Kodi per gjuhe (web) si: XHTML, CSS, JS, PHP, AS3 etj. si dhe per Desktop: C++, Java, Adobe Air etj. + programe/praktika te ndryshme.
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Snap is an OpenSource ScreenShot capturing utility written completely using Java Swing. It has a GUI Version and a command line variant which the user can choose based upon his/her choice. The captured ScreenShot can be saved in either jpg or png format.
