Search Results for "sequence scaffold, java" - Page 7
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Showing 206 open source projects for "sequence scaffold, java"
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JRET (Java Reverse-Engineering Tool) is a program that is capable of reconstructing sequence diagrams from JUnit testsuites through dynamic analysis. It is written in Java/AspectJ and provides a GUI as well as command-line possibilities.
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Sipana is a distributed SIP monitoring tool to monitor the SIP signaling behavior using sequence diagrams and providing SIP end-to-end performance metrics through a centralized Web interface. For more information please visit http://sipana.org/
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Re-searcher is the system for recurrent psiblast searches. It enables timely detection of new proteins on the protein sequence databases. Searches can be done on a local server or at NCBI. It has a user-friendly web interface.
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PepT-IDE is a protein analysis tool that is used for multiple sequence alignment, 3D visualization and displaying protein contact maps for protein sequences and structures. It also has feedback communication between the different views of the protein.
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Java application that puts up a dialog and allows one to modify the overall volume levels of a MIDI file. Also trims leading and trailing silent regions. Volume can be adjusted while the MIDI sequence is playing.
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ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins. Sequences can be requested by GI or accession number. ORFprimer is an extended software package for high throughput PCR primer design for biological sequences
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Geneview is a visualisation tool to display genetic sequence data stored in nucleic sequence databases like <A HREF="http://www.ncbi.nlm.nih.gov/Genbank/">GenBank</A>.
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J3dPSV 1.0 is a graphical application package for viewing and modeling of three dimensional structures of protein structure, including multiple chain sequence table and a three-dimensional (3D) protein structure viewer.
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Many design artifacts can be directly executed. UML state processes can be executed by a state machine; UML sequence diagrams can be executed directly. ExecDesign will be a suite of Java tools which can be used to document and execute UML designs.
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BioStream enables bioinformatics researchers to create, query and apply tools to their own databases. It supports sequence files and other data types by allowing the creation of metadata definition files.
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OpenTimeLine is a project to provide to the community a framework and a new kind of Music sequencer dedicated to graphical scores. It use the fudi protocol to sequence events for Pure Data.
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JSequencer is a development tool which autogenerates Sequence diagrams. It's ideal for design and debugging. Wire it with Spring and you can produce Sequence Diagrams without writing any code! The produced output can be viewed using SequencerUI(included
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BIOLAP - OLAP for Genome and Biology Data Sets. This project extends Mondrian OLAP to biology data sets. We provide tools to slice and dice genomic sequence similarities and more easily explore large genomic data sets.
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PARs is a bioinformatics tool for the analysis of cis-regulatory DNA sequences. Composed of two parts: a suite of sequence analysis algorithms for predicting cis-binding sites in DNA sequences and a GUI for visualisation and exploration of the results.
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Framework that adds security functions to Java web applications. It is used as an add-on for Struts framework. It is written in Java and provides web-commands for java web pages and provides several security services such as sequence control invocation.
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DNA Replicator is a graphical tool (written in java) that compute the complementary sequence from an input DNA sequence. It's a really easy used application.
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TaxonDNA is a simple but extensible system for performing simple DNA (and other) sequence manipulations in Java. We hope to create a simple framework which can be quickly extended to create bioinformatics applications.
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PROMPT is a system for retrieval, analysis, mapping and comparison of proteins. It allows easy mapping of different types of sequence IDs, data retrieval and integration, a multitude of analysis and comparison algorithms and a full-blown easy to use GUI.
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winKnocks is an encrypted(DES) port knocking tool. Knock sequences are defined through XML files; users specify: number of packets of each knock sequence, payload and header of each packet. Logging capability. Generation of smoke packets.No replay-attack
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An investigation into an audio compression technique which identifies repeating sequences in audio and uses this information to compress the audio data.
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StatGen uses information from a genetic distance matrix or a newick tree to summarize the sequence variation within or between groups of sequences with summary statistics and produce graphical reports of those statistics.
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Jassda is a framework that extracts a sequence of method-invokations from a Java application during runtime using the Java Debug Interface (JDI). Jassda provides two modules that operate on the sequence: a logger and a trace-checker
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