Search Results for "sequence scaffold, java" - Page 5

Molecular-based diagnostic assays are the gold standard for infectious diseases today, since they allow a rapid and sensitive identification and typing of various pathogens. While PCR can be designed to be specific for a certain pathogen, a subsequent sequence analysis is frequently required for confirmation or typing. The design of appropriate PCR-based assays is a complex task, especially when conserved discriminating polymorphisms are rare or if the number of types which need to be...

GenLab abbreviation of Genetics Laboratory .It is a user-friendly bioinformatics tool to support your bioinformatics lab work. GenLab creates a software user-friendly environment, which makes users to make a large number of protein, DNA, and RNA sequence analysis and excellent graphical viewing. It also provides powerful environment for simulations of Protein 3D molecular models. GenLab typically provides: •User-friendly graphical tools used for finding and working with relevant...

JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genome assembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm with auxiliary methods, allowing management of the alignments generated. It has graphical interface for manipulation and visualization of the actions, uniting features that help in editing the sequences. It has internal projects manageable and...

Index biological data (genbank sheets, Uniprot...) in a Solr indexer, with index shard support and provides a query interface. Project goal is to create a virtual image with indexer and web interface to query and visualize biological data.

JSeqUnit enhances Javadoc documentation with UML sequence diagrams that are generated with the help of JUnit tests. It uses JSeq to trace the execution of test executions. It supports re-engineering of components through improved reverse engineering of methods with the help of sequence diagrams.

FOREVER is an environment to translate UML Sequence Diagrams to Petri Nets and ckeck system properties with SMV. The tool receives as input sequence diagrams of UML and provides the Petri net in three different formats: APNN, PNML and SMV .

A general purpose distributed hash table adapted for sequence analysis. This program searches for all maximal, exact unique n-mers from a given set of genomes. Originally, this program's primary use was to design resequencing microarrays.

Simple Java bot, repeat a text sequence using a defined time window. You can load a text file and read it line by line in a specific time window and simulate a conversation.

SIMACT is a 3D smart home simulator for activity recognition developped at LIARA during the summer 2009. The goal of SIMACT is to enable scientist to simulate execution sequence of activity inside a smart home to conduct their research.

Learning stroke-order is the key to remembering Kanji. Stroke Order Diagram Builder allows you to visually record the stroke sequence of Kanji glyphs from specially prepared fonts.

Graphical User Interface for a software used to assess adaptive evolution in protein-coding genes. Makes use of several known bioinformatics software. IMPACT is free software, targeted to the scientific community. Maldonado E, Dutheil JY, da Fonseca RR, Vasconcelos V, Antunes A (2011) IMPACT: Integrated Multiprogram Platform for Analyses in ConTest. Journal of Heredity, 102 (3): 366-369. doi: https://doi.org/10.1093/jhered/esr003

VELMA stands for Visualization & Exploration of Large Multiple sequence Alignments. VELMA is a Java tool for visualizing alignments of large numbers of biological sequences that exceed the capabilities of existing software.

MSA2SNP is a tool for mining SNP sites in multiple sequence alignment (MSA). This tool inherits the easy-to-use interface from MEGA4 Explorer with advance data presentation. MSA2SNP lets you visualize alignments and import from CLUSTAL program directly.

3D Genome Tuner draws circular genome map and enables viewing multi-genomes in 3D context. It also provides genome analysis and sequence alignment, making it a powerful tool in genome studies and demonstrations.

A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.

CloudBurst is a parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics.

Contemplate is a bioinformatics tool for finding cis-regulatory modules (CRMs) in noncoding genomic regions using comparative sequence data.

Knime (http://www.knime.org) nodes for sequence bioinformatics. Sequime is an eclipse plug-in for the KNIME data mining platform, providing additional nodes for reading, processing and visualizing sequence information.

Reference compression tools for sequence read data.

SRMA is a post-alignment micro re-aligner for next-generation high throughput sequencing data.

GenoGUARD is a DNA sequence screening software that implements the best match method recommended by the federal government to detect the presence of biosecurity threats in synthetic DNA orders.

"Ugo Capeto's Ear Training Lower Higher" is a java program that trains your ear to recognize if a note is lower or higher than the previous one in a two-note sequence. Extract rar archive file and double-click the jar file (needs java).

TooRAW is a little app that takes a folder containing a PNG image sequence and merges it into a single RAW video stream. Built with Processing 1.2.1

JStreb0r an Application that helps you to teach vocabulary. You'll be able to create your own lists and save them in files. You can start a asking-run, which is a sequence that asks you all selected words. At the end, there will be a score.

This educational project to show students how is operation are parsed in case of right to left or left to right with different precedence priority.