Search Results for "java expression evaluator" - Page 2
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Showing 258 open source projects for "java expression evaluator"
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sRNAWorkbench
The UEA sRNA Workbench
A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data -
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JQM Java Quine McCluskey
JQM - Java Quine McCluskey for minimization of Boolean functions.
Java Quine McCluskey implements the Quine McCluskey algorithm with Petrick’s Method (or the method of prime implicants) for minimization of Boolean functions. This software can be used both for learning and solving real problems. As a learning/teaching tool, it presents not only the results but also how the problem was solved as well as how to use Karnaugh Maps to solve the problem. Up to sixteen functions of sixteen variables can be minimized. A graphical interface is provided for entering... -
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The Pythonizer
Converts a Java program to the equivalent Python program
An automatic source-code converter (transcompiler) that converts a valid Java program to the equivalent Python program. Uses Python naming conventions and indentation convention. -
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JavaRegExpDebug
Java regular expression debugger
A simple GUI application to debug regular expression. -
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Easy Rules
The simple, stupid rules engine for Java
The simple, stupid rules engine for Java. As of December 2020, Easy Rules is in maintenance mode. This means only bug fixes will be addressed from now on. Version 4.1.x is the only supported version. Please consider upgrading to this version at your earliest convenience. Lightweight library and easy-to-learn API. POJO-based development with an annotation programming model. Useful abstractions to define business rules and apply them easily with Java. The ability to create composite rules from... -
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From PEG to a practical parser
Transcribe Parsing Expression Grammar into a parser written in Java.
Tool to transcribe Parsing Expression Grammar into a parser written in Java. Parsing Expression Grammar (PEG) is a way to specify recursive-descent parsers with limited backtracking. The use of backtracking lifts the LL(1) restriction usually imposed by top-down parsers. In addition, PEG can define parsers with integrated lexing. Unlike some existing parser generators for PEG, the tool does not produce a complex and storage-hungry "packrat parser", but a collection of transparent... -
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TSMiner is a software program for reconstructing time-specific regulatory networks for time-series expression data. TSMiner has three key modules: first, predicting the time-specific activated/repressed transcription factors (TFs); second, predicting the biological pathways associated with the predicted TFs; third, merging the TFs and pathways into time-specific regulatory networks. TSMiner provides extensive interactive operations to help users explore the results of each module. For example...
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xUtils3
Android orm, bitmap, http, view inject
xUtils includes orm, http(s), image, view annotations, but it is still very lightweight (251K), and has powerful features and is easy to expand. Efficient and stable orm tool, which makes it more convenient to support cookies and caching when the http interface is implemented. Based on UrlConnection, the bottom layer will be implemented by okHttp after Android4.4. The request protocol supports 11 predicates: GET, POST, PUT, PATCH, HEAD, MOVE, COPY, DELETE, OPTIONS, TRACE, CONNECT. Supports... -
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COHCAP
City of Hope CpG Island Analysis Pipeline
COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through... -
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JFRenamer
Rename files with : recursion (sub-folders), undo, regular expression
Rename files with advanced capacity (recursion, undo, regular expression, variables...) for Windows and LINUX. Comments and Help welcome. You must install JAVA Runtime V1.6 or more. See http://jfrenamer.sourceforge.net/ -
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PPIXpress
specific protein interaction networks from transcript expression
Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal... -
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Boot
Build tooling for Clojure
Boot is a Clojure build framework and ad-hoc Clojure script evaluator. Boot provides a runtime environment that includes all of the tools needed to build Clojure projects from scripts written in Clojure that run in the context of the project. Build processes for applications always end up being complex things. A simple web application, for instance, may require many integrations–asset pipelines, deployment to different environments, the compilation of multiple artifacts with different compilers... -
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jXLS is a small and easy-to-use Java library for writing Excel files using XLS templates and reading data from Excel into Java objects using XML configuration
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Javaluator
A java infix evaluator based on "Shunting Yard" algorithm.
Evaluate an arithmetic expression is as simple as: Double result = new DoubleEvaluator().evaluate("(e^3-1)*sin(pi/4)*ln(pi^2)"). But Javaluator provides you with much more ... Key features: - Functions support, including variable argument count. - Constants support: e, pi, etc ... - Variables support: Example sin(x) for x = pi/4. - Highly configurable: Reduce the built-in operator or function sets, define your own brackets. - Extensible: Define your own grammar, or extends... -
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MorganaXProc (Implements XProc 1.0)
A Java implementation of XProc: An XML Pipeline Language
This project is now abandoned in favour of MorganaXProc-III which implements XProc 3.0: https://sourceforge.net/projects/morganaxproc-iiise/ MorganaXProc is a full implementation of XProc: An XML Pipeline Language (W3C Recommendation 11 May 2010) written in Java, supporting all required and optional steps, the steps proposed on EXProc.org and also the document templating steps "p:in-scope-names" and "p:template". XPath 2.0 or XPath 3.0 is used as expression language. XSLT and XQuery... -
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DACO-algorithm
A novel transcription factor complex prediction algorithm.
Eukaryotic gene expression is controlled through molecular logic circuits that combine regulatory signals of many different factors. Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines protein-protein... -
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Android TextView-LinkBuilder
Insanely easy way to define clickable links within a TextView.
Insanely easy way to create clickable links within a TextView. While creating Talon for Twitter, one of the most difficult things I encountered was creating these clickable links based on a specific text. Luckily, I have made it easy for anyone to apply this type of style to their TextView's. Similar to how all the big players do it (Google+, Twitter, cough Talon cough), this library allows you to create clickable links for any combination of Strings within a TextView. -
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Agera
Reactive programming for Android
.... It introduces a flavor of functional reactive programming, facilitates clear separation of the when, where and what factors of a data processing flow, and enables describing such a complex and asynchronous flow with a single expression, in near natural language. -
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mep4j
Math Expression Parser 4 Java
Math Expression Parser 4 Java MEP4J is a high performance math expression strings parser for Java (J2SE >= 5). Compare its performance against similiar libraries and let me know your experince. The library manages the 5 operators (+, -, /, %, *) together with the following functions: - "abs" - "cos" - "sin" - "acos" - "asin" - "cosh" - "sinh" - "tan", - "tanh" - "atan" - "sqrt" - "cbrt" - "root" - "log" - "log10" - "log1p" - "exp" - "expm1" - "atan2" - "pow... -
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Binary Stream Editor
A stream editor in java that can handle text/binary formats
A stream editor that can be invoked by another java program or also the command line. It can handle binary data too. Unlike newline based programs like sed, it allows different ways of reading the stream through the traverser, buffer and commands interfaces. A traverser decides how the data is read. This data is stored in the buffer. The commands decide what to do with this data. All data is handled as characters, by specifying an encoding. For binary data, the encoding ISO-8859-1 is used... -
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data... -
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CalclipseMath
Java math expression parser and script interpreter
CalclipseMath – CalM for short – is a math parser written in Java. With a few lines of code CalM enables your application to evaluate user-supplied mathematical expressions, such as "e^(sin .25pi)" and "(sqrt e)^(sqrt 2)". The standard configuration of the parser has a wide variety of mathematical operations, ranging from basic arithmetic, trigonometry, combinatorics, linear algebra and more. CalM includes a script interpreter which is based on the math parser. The CalM scripting language... -
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Advance-PCT-1.0
A novel Code transformation technique to guide test input generator
Advance_PCT is a pre-processing technique, that simplifies the complex boolean expression present in a C program. It identifies the boolean expression and creates equivalent conditional branches with an empty body. These additional statements along with original program supplied into test executor to improve test data. It ensures that each atomic conditions have been invoked at least once true and once false. It is done to achieve higher MC/DC, because according to the definition of MC/DC... -
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Args
A java configuration file and command line parser
Powerful rule-based command line parser and cofiguration reader. Options can be created using annotations or manually using a powerful API. Options are grouped into hierarchical namespace, allowing sophisticated inclusion, exclusion and grouping based on rules. Supports multiple dialects and automatic document creator such as typical usage and UNIX manpages. POSSIX, GNU, MSDOS command line parser dialects. XML, INI, PROPERTIES configuration file types. Database and general persistance or... -
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Discriminative Language Editor
Discriminative language editor based on ontologies
Text editor in Java that is able to detect discriminative expressions while the user is typing. When the internal ontology-based analyzer detects a potential discriminative expression the user is advised by underscoring the related words in the text. A descriptive message about the issue is also shown to the user when the cursor is placed over the potential discriminative expression.
