Open Source Linux Data Visualization Software - Page 14
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MethodOfLines.jl
Automatic Finite Difference PDE solving with Julia SciML
MethodOfLines.jl is a Julia package for automated finite difference discretization of symbolically defined PDEs in N dimensions. It uses symbolic expressions for systems of partial differential equations as defined with ModelingToolkit.jl, and Interval from DomainSets.jl to define the space(time) over which the simulation runs. This project is under active development, therefore the interface is subject to change. The docs will be updated to reflect any changes, please check back for current usage information. -
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Molly.jl
Molecular simulation in Julia
Much of science can be explained by the movement and interaction of molecules. Molecular dynamics (MD) is a computational technique used to explore these phenomena, from noble gases to biological macromolecules. Molly.jl is a pure Julia package for MD, and for the simulation of physical systems more broadly. The package is described in a talk at Enzyme Conference 2023 and an earlier talk at the JuliaMolSim minisymposium at JuliaCon 2022. Slides are also available for a tutorial in September 2023. -
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NBInclude.jl
import code from IJulia Jupyter notebooks into Julia programs
NBInclude is a package for the Julia language that allows you to include and execute IJulia (Julia-language Jupyter) notebook files just as you would include an ordinary Julia file. The goal of this package is to make notebook files just as easy to incorporate into Julia programs as ordinary Julia (.jl) files, giving you the advantages of a notebook (integrated code, formatted text, equations, graphics, and other results) while retaining the modularity and re-usability of .jl files. -
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NFFT
The official NFFT library repository
NFFT is a software library, written in C, for computing non-equispaced fast Fourier transforms and related variations. -
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OptimalTransport.jl
Optimal transport algorithms for Julia
This package provides some Julia implementations of algorithms for computational optimal transport, including the Earth-Mover's (Wasserstein) distance, Sinkhorn algorithm for entropically regularized optimal transport as well as some variants or extensions. Notably, OptimalTransport.jl provides GPU acceleration through CUDA.jl and NNlibCUDA.jl. -
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OrientDB
DBMS supporting graph, document, full-text and geospatial models
OrientDB is an Open Source Multi-Model NoSQL DBMS with the support of Native Graphs, Documents, Full-Text search, Reactivity, Geo-Spatial and Object Oriented concepts. It's written in Java and it's amazingly fast. No expensive run-time JOINs, connections are managed as persistent pointers between records. You can traverse thousands of records in no time. Supports schema-less, schema-full and schema-mixed modes. Has a strong security profiling system based on user, roles and predicate security and supports SQL amongst the query languages. Thanks to the SQL layer it's straightforward to use for people skilled in the Relational world. OrientDB adheres to the NoSQL movement even though it supports ACID Transactions and SQL as query language. In this way it's easy to start using it without having to learn too much new stuff. -
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PGFPlotsX.jl
Plots in Julia using the PGFPlots LaTeX package
PGFPlotsX is a Julia package to generate publication quality figures using the LaTeX library PGFPlots. It is similar in spirit to the package PGFPlots.jl but it tries to have a very close mapping to the PGFPlots API as well as minimize the number of dependencies. The fact that the syntax is similar to the TeX version means that examples from Stack Overflow and the PGFPlots manual can easily be incorporated in the Julia code. -
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POMDPs
Interface for defining, solving, simulating Markov decision processes
A Julia interface for defining, solving and simulating partially observable Markov decision processes and their fully observable counterparts. The POMDPs.jl package contains only the interface used for expressing and solving Markov decision processes (MDPs) and partially observable Markov decision processes (POMDPs). The POMDPTools package acts as a "standard library" for the POMDPs.jl interface, providing implementations of commonly-used components such as policies, belief updaters, distributions, and simulators. -
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PairPlots.jl
Beautiful and flexible vizualizations of high dimensional data
Beautiful and flexible visualizations of high-dimensional data. This package produces pair plots, otherwise known as corner plots or scatter plot matrices: grids of 1D and 2D histograms that allow you to visualize high-dimensional data. Pair plots are an excellent way to visualize the results of MCMC simulations, but are also a useful way to visualize correlations in general data tables. The default styles of this package roughly reproduce the output of the Python library corner.py for a single series and chainconsumer.py for multiple series. If these are not to your tastes, the package aims to be highly configurable. -
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Pkg Julia
Package manager for the Julia programming language
Unlike traditional package managers, which install and manage a single global set of packages, Pkg is designed around “environments”: independent sets of packages that can be local to an individual project or shared and selected by name. The exact set of packages and versions in an environment is captured in a manifest file which can be checked into a project repository and tracked in version control, significantly improving reproducibility of projects. If you’ve ever tried to run code you haven’t used in a while only to find that you can’t get anything to work because you’ve updated or uninstalled some of the packages your project was using, you’ll understand the motivation for this approach. In Pkg, since each project maintains its own independent set of package versions, you’ll never have this problem again. Moreover, if you check out a project on a new system, you can simply materialize the environment described by its manifest file and immediately be up and running. -
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PlutoSliderServer.jl
Web server to run just the `@bind` parts of a Pluto.jl notebook
Web server to run just the @bind parts of a Pluto.jl notebook. PlutoSliderServer can run a notebook and generate the export HTML file. This will give you the same file as the export button inside Pluto (top right), but automatically, without opening a browser. One use case is to automatically create a GitHub Pages site from a repository with notebooks. For this, take a look at our template repository that used GitHub Actions and PlutoSliderServer to generate a website on every commit. Many input elements only have a finite number of possible values, for example, PlutoUI.Slider(5:15) can only have 11 values. For finite inputs like the slider, PlutoSliderServer can run the slider server in advance, and precompute the results to all possible inputs (in other words: precompute the response to all possible requests). -
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PolyChaos.jl
Julia package to construct orthogonal polynomials
PolyChaos is a collection of numerical routines for orthogonal polynomials written in the Julia programming language. Starting from some non-negative weight (aka an absolutely continuous nonnegative measure). -
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ProbabilisticCircuits.jl
Probabilistic Circuits from the Juice library
This module provides a Julia implementation of Probabilistic Circuits (PCs), tools to learn structure and parameters of PCs from data, and tools to do tractable exact inference with them. Probabilistic Circuits provides a unifying framework for several family of tractable probabilistic models. PCs are represented as computational graphs that define a joint probability distribution as recursive mixtures (sum units) and factorizations (product units) of simpler distributions (input units). Given certain structural properties, PCs enable different range of tractable exact probabilistic queries such as computing marginals, conditionals, maximum a posteriori (MAP), and more advanced probabilistic queries. -
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ProximalOperators.jl
Proximal operators for nonsmooth optimization in Julia
Proximal operators for nonsmooth optimization in Julia. This package can be used to easily implement proximal algorithms for convex and nonconvex optimization problems such as ADMM, the alternating direction method of multipliers. With using ProximalOperators the package exports the prox and prox! methods to evaluate the proximal mapping of several functions. -
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PythonCall & JuliaCall
Python and Julia in harmony
Bringing Python® and Julia together in seamless harmony. Call Python code from Julia and Julia code from Python via a symmetric interface. Simple syntax, so the Python code looks like Python and the Julia code looks like Julia. Intuitive and flexible conversions between Julia and Python: anything can be converted, you are in control. Fast non-copying conversion of numeric arrays in either direction: modify Python arrays (e.g. bytes, array. array, numpy.ndarray) from Julia or Julia arrays from Python. Helpful wrappers: interpret Python sequences, dictionaries, arrays, dataframes and IO streams as their Julia counterparts, and vice versa. -
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Queryverse.jl
A meta package for data science in Julia
Queryverse.jl is a meta package that pulls together a number of packages for handling data in Julia. -
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RCall.jl
Call R from Julia
R is a language for statistical computing and graphics that has been around for a couple of decades and it has one of the most impressive collections of scientific and statistical packages of any environment. Recently, the Julia language has become an attractive alternative because it provides the remarkable performance of a low-level language without sacrificing the readability and ease of use of high-level languages. However, Julia still lacks the depth and scale of the R package environment. This package, RCall.jl, facilitates communication between these two languages and allows the user to call R packages from within Julia, providing the best of both worlds. Additionally, this is a pure Julia package so it is portable and easy to use. -
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ResumableFunctions.jl
C# style generators a.k.a. semi-coroutines for Julia
C# has a convenient way to create iterators using the yield return statement. The package ResumableFunctions provides the same functionality for the Julia language by introducing the @resumable and the @yield macros. These macros can be used to replace the Task switching functions produce and consume which were deprecated in Julia v0.6. Channels are the preferred way for inter-task communication in Julia v0.6+, but their performance is subpar for iterator applications. -
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Roots.jl
Root finding functions for Julia
This package contains simple routines for finding roots, or zeros, of scalar functions of a single real variable using floating-point math. The find_zero function provides the primary interface. The basic call is find_zero(f, x0, [M], [p]; kws...) where, typically, f is a function, x0 a starting point or bracketing interval, M is used to adjust the default algorithms used, and p can be used to pass in parameters. Bisection-like algorithms. For functions where a bracketing interval is known (one where f(a) and f(b) have alternate signs), a bracketing method, like Bisection, can be specified. The default is Bisection, for most floating point number types, employed in a manner exploiting floating point storage conventions. For other number types (e.g. BigFloat), an algorithm of Alefeld, Potra, and Shi is used by default. These default methods are guaranteed to converge. Other bracketing methods are available. -
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SatelliteToolbox.jl
A toolbox for satellite analysis written in julia language
The SatelliteToolbox.jl contains a set of packages with functions to perform analysis and build simulations related to satellites. It is used on a daily basis on projects at the Brazilian National Institute for Space Research (INPE). -
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SciML Style Guide for Julia
A style guide for stylish Julia developers
The SciML Style Guide is a style guide for the Julia programming language. It is used by the SciML Open Source Scientific Machine Learning Organization. As such, it is open to discussion with the community. If the standard for code contributions is that every PR needs to support every possible input type that anyone can think of, the barrier would be too high for newcomers. Instead, the principle is to be as correct as possible to begin with, and grow the generic support over time. All recommended functionality should be tested, and any known generality issues should be documented in an issue (and with a @test_broken test when possible). However, a function that is known to not be GPU-compatible is not grounds to block merging, rather it is encouraged for a follow-up PR to improve the general type support. -
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ScikitLearn.jl
Julia implementation of the scikit-learn API
The scikit-learn Python library has proven very popular with machine learning researchers and data scientists in the last five years. It provides a uniform interface for training and using models, as well as a set of tools for chaining (pipelines), evaluating, and tuning model hyperparameters. ScikitLearn.jl brings these capabilities to Julia. Its primary goal is to integrate both Julia- and Python-defined models together into the scikit-learn framework. -
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Setfield.jl
Update deeply nested immutable structs
Update deeply nested immutable structs. We plan to maintain Setfield.jl for a long time. We will however not add new features. -
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Shapefile.jl
Parsing .shp files in Julia
This library supports reading and writing ESRI Shapefiles in pure Julia. -
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SymEngine.jl
Julia wrappers of SymEngine
Julia Wrappers for SymEngine, a fast symbolic manipulation library, written in C++.