jchart2d is a real-time charting library written in java.
Live Trace Visualization for Large Software Landscapes
An extensible GUI for computational chemistry codes
Matlab code to visualise brain graphs from connectivity matrices
XNBC is a graphic application to simulate biologic neural networks.
Scenario Editing and Visualization tool for Scientific scenes
cy2fluxviz : Cytoscape 2 plugin for flux distribution visualization
Java-based sonification data analysis
Converts value change dump files to a plain-text table.
DSOL: A Distributed Simulation Object Library implemented in Java