Search Results for "matlab glass brain"
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Showing 23 open source projects for "matlab glass brain"
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CBIG
Computational Brain Imaging Group tools
CBIG is a comprehensive toolkit maintained by Thomas Yeo’s Computational Brain Imaging Group containing tools for processing and analyzing neuroimaging data—including fMRI preprocessing pipelines, brain parcellation algorithms, mental disorder subtyping models, fMRI dynamic models, registrations between brain spaces, and phenotypic prediction algorithms. After cloning/downloading this repository, please see README inside setup directory to see instructions on how to set up your local... -
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EEGLAB
EEGLAB is an open source signal processing environment
EEGLAB is an open source, MATLAB-based interactive environment for analyzing electrophysiological signals such as EEG and MEG. It incorporates powerful tools for data import, preprocessing, independent component analysis (ICA), time-frequency analysis, artifact rejection, and visualization—all within a GUI framework that also supports scripting and plugin extensions. EEGLAB is an open source signal processing environment for electrophysiological signals running on Matlab and Octave (command... -
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FieldTrip
The MATLAB toolbox for MEG, EEG and iEEG analysis
FieldTrip is the MATLAB software toolbox for MEG, EEG and iEEG analysis, which is released free of charge as open source software under the GNU general public license. FieldTrip is developed by members and collaborators of the Donders Institute for Brain, Cognition, and Behaviour at Radboud University, Nijmegen, the Netherlands. The toolbox offers advanced analysis methods of MEG, EEG, and invasive electrophysiological data, such as time-frequency analysis, source reconstruction using dipoles, distributed sources and beamformers and non-parametric statistical testing. ... -
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mTRF-Toolbox
A MATLAB package for modelling multivariate stimulus-response data
mTRF-Toolbox is a MATLAB package for modelling multivariate stimulus-response data, suitable for neurophysiological data such as MEG, EEG, sEEG, ECoG and EMG. It can be used to model the functional relationship between neuronal populations and dynamic sensory inputs such as natural scenes and sounds, or build neural decoders for reconstructing stimulus features and developing real-time applications such as brain-computer interfaces (BCIs). -
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iElectrodes
intracranial electrodes localization toolbox
iElectrodes is a free and open-source Matlab® toolbox to obtain intracranial electrode coordinates from MRI and CT images. Precise and reliable localization can be achieved fast and in a semiautomatic way with minimal user intervention. The toolbox works with ECoG (subdural grids and strips) and SEEG (depth) electrodes. The new GridFit algorithm can precisely localize high-density electrodes (up to 3mm). -
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BRAIN
BRAIN - Ultrasonic Array Data Acquisition and Processing Platform
BRAIN is a software platform for ultrasonic array data acquisition and processing, written by the Ultrasonics and Non-Destructive Testing (NDT) group at the University of Bristol, UK. BRAIN is particularly designed around Full Matrix Capture (FMC) for NDT applications. BRAIN is written in Matlab and requires a Matlab installation (the standalone version of BRAIN is no longer supported). -
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CorThiZon
Cortical Thickness of brain by Zones
CorThiZon is a Matlab toolbox. MRI 3D T1 images are treated to estimate cortical thickness by zones in native and normalized space. It uses a Laplace-based technique following brain segmentation. Results can be easily reported in Excel files for further statistical analysis. If you use this toolbox, please reference: ‘Early diagnostic of Alzheimer’s disease using cortical thickness: impact of cognitive reserve', Querbes O, Aubry F, Pariente J, Lotterie JA, Démonet JF, Duret V, Puel M, Berry I, Fort JC, Celsis P, Alzheimer’s Disease Neuroimaging Initiative, Brain, 2009 Aug, 132(Pt 8):2036-47 A footnote giving the link to: http://sourceforge.net/projects/corthizon/ will be appreciated. -
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DBSFILT is a matlab toolbox designed to detect and remove deep brain stimulation induced artifacts from EEG or MEG data.
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A framework to run MATLAB programs as batch jobs. Features a structured input description, integrity constraints and GUI.Independent parts of a job can execute in parallel on a cluster computer. Developed at Freiburg Brain Imaging (FBI) - http://fbi.uniklinik-freiburg.de/
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Brain imaging software produced by the Brain Research Imaging Centre of The University of Edinburgh.
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The purpose of this program is to provide the user with a convenient algorithm for automatic Independent Component (IC) selection with respect to the contributions of the ICs to a certain event-related brain potential (ERP). www.jan-wessel.de
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mctc4bmi
Matrix and Tensor Completion for Background Model Initialization
MCTC4BMI (Multimodal Compressed Sensing and Tensor Decomposition for Brain-Machine Interfaces) is a MATLAB toolbox designed to process and analyze EEG data. It applies compressed sensing and tensor decomposition techniques to improve brain-machine interface (BMI) performance. -
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Toolboxes for SPM (http://www.fil.ion.ucl.ac.uk/spm/) developed at Freiburg Brain Imaging (http://fbi.uniklinik-freiburg.de/)
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Flexible Brain Graph Visualizer
Matlab code to visualise brain graphs from connectivity matrices
This very configurable script allows you to plot a 3D (MNI space) visualisation of a brain graph, with edges represented by cylinders and vertices represented by spheres. To aid orientation, a cortical mesh can be added, as can convex hull outlines. The colouring and sizing scheme is fully configurable for both edges and vertices. You can see some example output in... -
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PANDA
Passing Attributes between Networks for Data Assimilation
...PANDA integrates multiple sources of biological data, including protein-protein interaction, gene expression, and sequence motif information, in order to reconstruct genome-wide, condition-specific regulatory networks. PANDA is also available in other programming languages, including: MATLAB/Octave: (1) https://drive.google.com/a/channing.harvard.edu/file/d/0BwVdzX3nIj6RamtmNVdKYVk1N2c/view?usp=sharing (2) https://github.com/QuackenbushLab/matlab-panda Python: (1) https://github.com/davidvi/pypanda (2) https://github.com/QuackenbushLab/pypanda Bioconductor/R: http://www.bioconductor.org/packages/devel/bioc/html/pandaR.html For more information please see: https://sites.google.com/a/channing.harvard.edu/kimberlyglass/tools/panda or email kimberly dot glass at channing dot harvard dot edu -
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METAlab GTG
Matlab toolbox to run a GLM on graph theoretic properties in MRI data
This Matlab toolbox runs a GLM on graph theoretic network properties in brain networks. The GLM accepts continuous & categorical between-participant predictors and categorical within-participant predictors. Significance is determined via non-parametric permutation tests. The toolbox allows testing of both fully connected and thresholded networks (based on a range of thresholds). -
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Permeability GUI (PermGUI)
Graphical User Interface to calculate permeability measurements
PermGUI is a Matlab-based software which is developed for quantifying blood-brain barrier permeability from dynamic contrast enhanced (DCE) MR images. It does it in two steps: 1) calculating T1 maps from DCE-MRI, 2) calculating permeability parameters (such as permeability coefficient Ki and plasma volume Vp) using the T1 maps based on the Patlak method. -
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mfBox
A Matlab toolbox for performing model-free analysis of fMRI data
The mfBox is a Matlab toolbox for performing model-free analysis of multivariate data sets. It also plugs into SPM used for the analysis of multivariate brain recordings such as fMRI, SPECT and PET data sets. This project is looking for a new maintainer! -
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Glass Brain is a tool specifically designed for displaying neural connections within the human brain given multidimensional scan data and a connectivity graph. This project benefits from Qt, VTK, ITK, and CMake.
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Ongoing development of Matlab routines for interfacing the Brain Vision Analyser data files (load/save). This package is also compatible with the EEGLAB software, and may be uncompressed in the plugin folder of this software.
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CCA-fMRI is a SPM-toolbox (http://www.fil.ion.ucl.ac.uk/spm/) for detecting brain activity pattern using functional magnetic resonance imaging (fMRI) in combination with canonical correlation analysis.
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BrOxy is an open-source program used to analyse haemodynamic brain oxygenation from near-infrared spectroscopy data. It covers data import/export, filtering, correlation and multi-variate regression analysis, visualisation...
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A framework for analysis and visualization of functional connectivity as well as temporal ordering based on fMRI data recorded from human brain.
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