Search Results for "matlab glass brain"
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Showing 17 open source projects for "matlab glass brain"
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mTRF-Toolbox
A MATLAB package for modelling multivariate stimulus-response data
mTRF-Toolbox is a MATLAB package for modelling multivariate stimulus-response data, suitable for neurophysiological data such as MEG, EEG, sEEG, ECoG and EMG. It can be used to model the functional relationship between neuronal populations and dynamic sensory inputs such as natural scenes and sounds, or build neural decoders for reconstructing stimulus features and developing real-time applications such as brain-computer interfaces (BCIs). Toolbox Paper: http://dx.doi.org/10.3389/fnhum... -
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iElectrodes
intracranial electrodes localization toolbox
iElectrodes is a free and open-source Matlab® toolbox to obtain intracranial electrode coordinates from MRI and CT images. Precise and reliable localization can be achieved fast and in a semiautomatic way with minimal user intervention. The toolbox works with ECoG (subdural grids and strips) and SEEG (depth) electrodes. The new GridFit algorithm can precisely localize high-density electrodes (up to 3mm). Brain parcellations (atlas) and surfaces can be imported to aid 2D and 3D visualization... -
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BRAIN
BRAIN - Ultrasonic Array Data Acquisition and Processing Platform
BRAIN is a software platform for ultrasonic array data acquisition and processing, written by the Ultrasonics and Non-Destructive Testing (NDT) group at the University of Bristol, UK. BRAIN is particularly designed around Full Matrix Capture (FMC) for NDT applications. BRAIN is written in Matlab and requires a Matlab installation (the standalone version of BRAIN is no longer supported). -
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CorThiZon
Cortical Thickness of brain by Zones
CorThiZon is a Matlab toolbox. MRI 3D T1 images are treated to estimate cortical thickness by zones in native and normalized space. It uses a Laplace-based technique following brain segmentation. Results can be easily reported in Excel files for further statistical analysis. If you use this toolbox, please reference: ‘Early diagnostic of Alzheimer’s disease using cortical thickness: impact of cognitive reserve', Querbes O, Aubry F, Pariente J, Lotterie JA, Démonet JF, Duret V, Puel M... -
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A framework to run MATLAB programs as batch jobs. Features a structured input description, integrity constraints and GUI.Independent parts of a job can execute in parallel on a cluster computer. Developed at Freiburg Brain Imaging (FBI) - http://fbi.uniklinik-freiburg.de/
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DBSFILT is a matlab toolbox designed to detect and remove deep brain stimulation induced artifacts from EEG or MEG data.
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The purpose of this program is to provide the user with a convenient algorithm for automatic Independent Component (IC) selection with respect to the contributions of the ICs to a certain event-related brain potential (ERP). www.jan-wessel.de
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Flexible Brain Graph Visualizer
Matlab code to visualise brain graphs from connectivity matrices
This very configurable script allows you to plot a 3D (MNI space) visualisation of a brain graph, with edges represented by cylinders and vertices represented by spheres. To aid orientation, a cortical mesh can be added, as can convex hull outlines. The colouring and sizing scheme is fully configurable for both edges and vertices. You can see some example output in <http://www.ncbi.nlm.nih.gov/pubmed/22677149> <http://www.ncbi.nlm.nih.gov/pubmed/20541019> <http -
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Toolboxes for SPM (http://www.fil.ion.ucl.ac.uk/spm/) developed at Freiburg Brain Imaging (http://fbi.uniklinik-freiburg.de/)
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PANDA
Passing Attributes between Networks for Data Assimilation
.../file/d/0BwVdzX3nIj6RamtmNVdKYVk1N2c/view?usp=sharing (2) https://github.com/QuackenbushLab/matlab-panda Python: (1) https://github.com/davidvi/pypanda (2) https://github.com/QuackenbushLab/pypanda Bioconductor/R: http://www.bioconductor.org/packages/devel/bioc/html/pandaR.html For more information please see: https://sites.google.com/a/channing.harvard.edu/kimberlyglass/tools/panda or email kimberly dot glass at channing dot harvard dot edu -
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METAlab GTG
Matlab toolbox to run a GLM on graph theoretic properties in MRI data
This Matlab toolbox runs a GLM on graph theoretic network properties in brain networks. The GLM accepts continuous & categorical between-participant predictors and categorical within-participant predictors. Significance is determined via non-parametric permutation tests. The toolbox allows testing of both fully connected and thresholded networks (based on a range of thresholds). The toolbox also provides a data processing path for resting state fMRI data. Several options for partialing... -
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mfBox
A Matlab toolbox for performing model-free analysis of fMRI data
The mfBox is a Matlab toolbox for performing model-free analysis of multivariate data sets. It also plugs into SPM used for the analysis of multivariate brain recordings such as fMRI, SPECT and PET data sets. This project is looking for a new maintainer! -
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Glass Brain is a tool specifically designed for displaying neural connections within the human brain given multidimensional scan data and a connectivity graph. This project benefits from Qt, VTK, ITK, and CMake.
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Ongoing development of Matlab routines for interfacing the Brain Vision Analyser data files (load/save). This package is also compatible with the EEGLAB software, and may be uncompressed in the plugin folder of this software.
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CCA-fMRI is a SPM-toolbox (http://www.fil.ion.ucl.ac.uk/spm/) for detecting brain activity pattern using functional magnetic resonance imaging (fMRI) in combination with canonical correlation analysis.
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BrOxy is an open-source program used to analyse haemodynamic brain oxygenation from near-infrared spectroscopy data. It covers data import/export, filtering, correlation and multi-variate regression analysis, visualisation...
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A framework for analysis and visualization of functional connectivity as well as temporal ordering based on fMRI data recorded from human brain.
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