Open Source Data Visualization Software - Page 9
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PDMats.jl
Uniform Interface for positive definite matrices of various structures
Uniform interface for positive definite matrices of various structures. Positive definite matrices are widely used in machine learning and probabilistic modeling, especially in applications related to graph analysis and Gaussian models. It is not uncommon that positive definite matrices used in practice have special structures (e.g. diagonal), which can be exploited to accelerate computation. PDMats.jl supports efficient computation on positive definite matrices of various structures. In particular, it provides uniform interfaces to use positive definite matrices of various structures for writing generic algorithms, while ensuring that the most efficient implementation is used in actual computation. -
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StatProfilerHTML.jl
Show Julia profiling data in an explorable HTML page
This module formats the output from Julia's Profile module into an html rendering of the source function lines and functions, allowing for interactive exploration of any bottlenecks that may exist in your code. -
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SymEngine.jl
Julia wrappers of SymEngine
Julia Wrappers for SymEngine, a fast symbolic manipulation library, written in C++. -
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ThreeJS Globe Visualization
WebGL Globe Data Visualization as a ThreeJS reusable 3D object
Three Globe is a Three.js class for creating geographic data visualizations on interactive 3D globes. It is intended for developers who want globe visualization functionality directly inside an existing Three.js scene. Geographic information can be rendered through independent layers for points, arcs, polygons, paths, heatmaps, hexagons, tiles, particles, and other objects. The spherical projection makes it suitable for global spatial and network datasets. Developers retain access to the surrounding Three.js scene, camera, lighting, and rendering system. The library forms the lower-level visualization foundation used by related projects such as Globe.GL and can be combined with other Three.js objects and effects. -
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atpbar
Progress bars for threading and multiprocessing tasks on terminal
Progress bars for threading and multiprocessing tasks on the terminal and Jupyter Notebook. atpbar can display multiple progress bars simultaneously growing to show the progresses of iterations of loops in threading or multiprocessing tasks. atpbar can display progress bars on the terminal and Jupyter Notebook. atpbar can be used with Mantichora. atpbar started its development in 2015 as part of Alphatwirl. atpbar prevented physicists from terminating their running analysis codes, which would take many hours to complete, by showing progress bars indicating their codes were actually running. The progress bars have saved the physicists countless hours in total. atpbar had been the sub-package progress of alphatwirl until it became an independent package, with the name atpbar, in February 2019. -
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CausalityTools.jl
Algorithms for detecting associations, dynamical influences
CausalityTools.jl is a package for quantifying associations and dynamical coupling between datasets, independence testing, and causal inference. Association measures from conventional statistics, information theory, and dynamical systems theory, for example, distance correlation, mutual information, transfer entropy, convergent cross mapping and a lot more. A dedicated API for independence testing, which comes with automatic compatibility with every measure-estimator combination you can think of. For example, we offer the generic SurrogateTest, which is fully compatible with TimeseriesSurrogates.jl, and the LocalPermutationTest for conditional independence testing. -
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ConcurrentSim.jl
Discrete event process oriented simulation framework written in Julia
A discrete event process-oriented simulation framework written in Julia inspired by the Python library SimPy. One of the longest-lived Julia packages (originally under the name SimJulia). -
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Functors.jl
Parameterise all the things
Functors.jl provides tools to express a powerful design pattern for dealing with large/ nested structures, as in machine learning and optimization. For large machine learning models, it can be cumbersome or inefficient to work with parameters as one big, flat vector, and structs help manage complexity; but it is also desirable to easily operate over all parameters at once, e.g. for changing precision or applying an optimizer update step. -
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GeoInterface.jl
A Julia Protocol for Geospatial Data
This Package describe a set of traits based on the Simple Features standard (SF) for geospatial vector data, including the SQL/MM extension with support for circular geometry. Using these traits, it should be easy to parse, serialize and use different geometries in the Julia ecosystem, without knowing the specifics of each individual package. In that regard it is similar to Tables.jl, but for geometries instead of tables. -
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HDF5.jl
Save and load data in the HDF5 file format from Julia
HDF5 stands for Hierarchical Data Format v5 and is closely modeled on file systems. In HDF5, a "group" is analogous to a directory, a "dataset" is like a file. HDF5 also uses "attributes" to associate metadata with a particular group or dataset. HDF5 uses ASCII names for these different objects, and objects can be accessed by Unix-like pathnames, e.g., "/sample1/tempsensor/firsttrial" for a top-level group "sample1", a subgroup "tempsensor", and a dataset "firsttrial". For simple types (scalars, strings, and arrays), HDF5 provides sufficient metadata to know how each item is to be interpreted. For example, HDF5 encodes that a given block of bytes is to be interpreted as an array of Int64, and represents them in a way that is compatible across different computing architectures. However, to preserve Julia objects, one generally needs additional type information to be supplied, which is easy to provide using attributes. -
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ImageFiltering.jl
Julia implementations of multidimensional array convolution
Julia implementations of multidimensional array convolution and nonlinear stencil operations. ImageFiltering implements blurring, sharpening, gradient computation, and other linear filtering operations, as well nonlinear filters like min/max. -
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InferOpt.jl
Combinatorial optimization layers for machine learning pipelines
InferOpt.jl is a toolbox for using combinatorial optimization algorithms within machine learning pipelines. It allows you to create differentiable layers from optimization oracles that do not have meaningful derivatives. Typical examples include mixed integer linear programs or graph algorithms. -
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InfiniteOpt.jl
An intuitive modeling interface for infinite-dimensional optimization
A JuMP extension for expressing and solving infinite-dimensional optimization problems. InfiniteOpt.jl provides a general mathematical abstraction to express and solve infinite-dimensional optimization problems (i.e., problems with decision functions). Such problems stem from areas such as space-time programming and stochastic programming. InfiniteOpt is meant to facilitate intuitive model definition, automatic transcription into solvable models, permit a wide range of user-defined extensions/behavior, and more. -
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JuliaConnectoR
A functionally oriented interface for calling Julia from R
This R-package provides a functionally oriented interface between R and Julia. The goal is to call functions from Julia packages directly as R functions. Julia functions imported via the JuliaConnectoR can accept and return R variables. It is also possible to pass R functions as arguments in place of Julia functions, which allows callbacks from Julia to R. From a technical perspective, R data structures are serialized with an optimized custom streaming format, sent to a (local) Julia TCP server, and translated to Julia data structures by Julia. The results of function calls are likewise translated back to R. Complex Julia structures can either be used by reference via proxy objects in R or fully translated to R data structures. -
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Latexify.jl
Convert julia objects to LaTeX equations, arrays or other environments
This is a package for generating LaTeX maths from Julia objects. This package utilizes Julia's homoiconicity to convert expressions to LaTeX-formatted strings. Latexify.jl supplies functionalities for converting a range of different Julia objects. -
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Oceananigans.jl
Julia software for fast, friendly, flexible fluid dynamics on CPUs
Oceananigans is a fast, friendly, flexible software package for finite volume simulations of the nonhydrostatic and hydrostatic Boussinesq equations on CPUs and GPUs. It runs on GPUs (wow, fast!), though we believe Oceananigans makes the biggest waves with its ultra-flexible user interface that makes simple simulations easy, and complex, creative simulations possible. -
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The ARCHModels Package for Julia
A Julia package for estimating ARMA-GARCH models
ARCH (Autoregressive Conditional Heteroskedasticity) models are a class of models designed to capture a feature of financial returns data known as volatility clustering, i.e., the fact that large (in absolute value) returns tend to cluster together, such as during periods of financial turmoil, which then alternate with relatively calmer periods. This package provides efficient routines for simulating, estimating, and testing a variety of GARCH models. ARCH (Autoregressive Conditional Heteroskedasticity) models are a class of models designed to capture a feature of financial returns data known as volatility clustering, i.e., the fact that large (in absolute value) returns tend to cluster together, such as during periods of financial turmoil, which then alternate with relatively calmer periods. -
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jill
Command line installer of the Julia Language
On Linux, the best way to install Julia is to use the Generic Linux Binaries. And while all Linux users love manually downloading, unpacking, and linking their software, this script does it for you. -
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jlrs
Julia bindings for Rust
jlrs is a crate that provides access to most of the Julia C API, it can be used to embed Julia in Rust applications and to use functionality it provides when writing ccallable functions in Rust. Currently, this crate is only tested in combination with Julia 1.6 and 1.9, but also supports Julia 1.7, 1.8, and 1.10. Using the current stable version is highly recommended. The minimum supported Rust version is currently 1.65. Julia must be installed before jlrs can be used, jlrs is compatible with Julia 1.6 up to and including Julia 1.10. The JlrsCore package must also have been installed, if this is not the case it will automatically be added when jlrs is initialized by default. jlrs has not been tested with juliaup yet on Linux and macOS. -
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PLplot
Cross-platform, scientific graphics plotting library
PLplot is a cross-platform, scientific graphics plotting library that supports math symbols and human languages (via UTF-8 user input strings); plot capabilities for multiple non-interactive plot file formats and in multiple interactive environments; and bindings for multiple computer languages. -
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Ginkgo CADx is an extensible multi-platform Open Source Medical Imaging software which provides a complete DICOM Viewer solution with advanced capabilities.
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MathGL
A library for scientific data visualization
A free cross-platform library of fast C++ routines for the plotting of up to 3-ranged data. It can export to bitmap and vector EPS/SVG files. There are window interfaces (GLUT/FLTK/Qt) and console tools. MathGL can be used from C/Fortran/Python/Octav/Lua -
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Common Image Generator Interface (CIGI)
Industry standard communication with compliant image generators.
Software libraries and tools designed for implementation and testing of the Common Image Generator Interface (CIGI), an interface for communication between an image generator (IG) and host device in simulations. -
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101-0250-00
ETH course - Solving PDEs in parallel on GPUs
This course aims to cover state-of-the-art methods in modern parallel Graphical Processing Unit (GPU) computing, supercomputing and code development with applications to natural sciences and engineering. -
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BlockArrays.jl
BlockArrays for Julia
A block array is a partition of an array into blocks or subarrays, see Wikipedia for a more extensive description. This package has two purposes. Firstly, it defines an interface for an AbstractBlockArray block arrays that can be shared among types representing different types of block arrays. The advantage to this is that it provides a consistent API for block arrays. Secondly, it also implements two different types of block arrays that follow the AbstractBlockArray interface. The type BlockArray stores each block contiguously while the type PseudoBlockArray stores the full matrix contiguously. This means that BlockArray supports fast noncopying extraction and insertion of blocks while PseudoBlockArray supports fast access to the full matrix to use in for example a linear solver.
