Showing 17 open source projects for "structure"

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  • 1
    Cookiecutter Data Science

    Cookiecutter Data Science

    Project structure for doing and sharing data science work

    A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. When we think about data analysis, we often think just about the resulting reports, insights, or visualizations. While these end products are generally the main event, it's easy to focus on making the products look nice and ignore the quality of the code that generates them. Because these end products are created programmatically, code quality is still important!
    Downloads: 8 This Week
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  • 2
    Data Science Notes

    Data Science Notes

    Curated collection of data science learning materials

    Data Science Notes is a large, curated collection of data science learning materials, with explanations, code snippets, and structured notes across the typical end-to-end workflow. It spans foundational math and statistics through data wrangling, visualization, machine learning, and practical project organization. The content emphasizes hands-on understanding by pairing narrative notes with runnable examples, making it useful for both self-study and classroom settings. Because it aggregates...
    Downloads: 3 This Week
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  • 3
    CellTypist

    CellTypist

    A tool for semi-automatic cell type classification, harmonization

    ...Harmonization, match and harmonize cell types defined by independent datasets. integration, integrate cell and cell types with supervision from harmonization. CellTypist recapitulates cell type structure and biology of independent datasets. Regularised linear models with Stochastic Gradient Descent provide a fast and accurate prediction. Scalable and flexible. Python-based implementation is easy to integrate into existing pipelines. A community-driven encyclopedia for cell types.
    Downloads: 0 This Week
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  • 4

    DataPrep

    Python-based data preprocessing tool

    DataPrep v0.2 is a Tkinter-based GUI application/tool designed to assist users in data preprocessing, multicollinearity removal, and feature selection for a wide range of applications in Cheminformatics, Bioinformatics, Data Analysis, Feature Selection, Molecular Modeling, Machine Learning, and Quantitative-structure-property relationship (QSPR) studies. It includes functionality to load, process, and save datasets with support for different preprocessing & multicollinearity removal strategies with customizable parameter setting options.
    Downloads: 1 This Week
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  • 5
    Fondant

    Fondant

    Production-ready data processing made easy and shareable

    Fondant is a modular, pipeline-based framework designed to simplify the preparation of large-scale datasets for training machine learning models, especially foundation models. It offers an end-to-end system for ingesting raw data, applying transformations, filtering, and formatting outputs—all while remaining scalable and traceable. Fondant is designed with reproducibility in mind and supports containerized steps using Docker, making it easy to share and reuse data processing components....
    Downloads: 3 This Week
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  • 6
    DeepH-pack

    DeepH-pack

    Deep neural networks for density functional theory Hamiltonian

    DeepH-pack is the official implementation of the DeepH (Deep Hamiltonian) method described in the paper Deep-learning density functional theory Hamiltonian for efficient ab initio electronic-structure calculation and in the Research Briefing. DeepH-pack supports DFT results made by ABACUS, OpenMX, FHI-aims or SIESTA and will support HONPAS.
    Downloads: 3 This Week
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  • 7
    Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
    Downloads: 0 This Week
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  • 8
    LaueTools

    LaueTools

    open source python packages for X-ray MicroLaue Diffraction analysis

    LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools
    Downloads: 1 This Week
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  • 9
    fooltrader

    fooltrader

    Quant framework for stock

    Build a standard data schema, and then implement various connectors to import systems you are familiar with for analysis. fooltrader is a quantitative analysis trading system designed using big data technology, including data capture, cleaning, structuring, calculation, display, backtesting and trading. Its goal is to provide a unified framework for the whole market (stock, futures, bonds, foreign exchange, digital currency, macroeconomics, etc.) for research, backtesting, forecasting, and...
    Downloads: 0 This Week
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  • 10

    Py3DN

    Morphometric analysis and visualization of the 3D structure of neurons

    ...The application was developed in Python and uses Blender (an open source program) to produce detailed 3D representations of raw and processed data. Py3DN is described in the paper: Aguiar P et al, "Versatile morphometric analysis and visualization of the three-dimensional structure of neurons", Neuroinformatics, 2013, 11(4):393-403 doi: 10.1007/s12021-013-9188-z
    Downloads: 0 This Week
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  • 11
    NanoCap

    NanoCap

    Carbon Fullerene and Capped Nanotube Generator

    ...The implementation involves a standalone application which includes a GUI and allows for dynamic visual inspection through 3D rendering. In addition, the NanoCap core libraries can be used in custom Python scripts that enabled the user to produce structures in bulk or to include the structure generation routines into pre-existing code.
    Downloads: 3 This Week
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  • 12
    allink

    allink

    Software for data analysis, image processing, simulations, solver.

    Collection of utilities based on two basics classes: Matematica and VarData. Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures. Addyn) perform molecular dynamics and Monte Carlo simulations and has a solver for 4th oder PDE. Avvis) perform all the operation of Matematica on different sets of data visualized on a Qt graphical interface. ...
    Downloads: 0 This Week
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  • 13
    CAPLET

    CAPLET

    GDS visualization and parallelized capacitance extraction

    ...CAPLET can directly handle GDS2 layout files into capacitance matrices in both GUI and command line interfaces. The internal extraction algorithm is specialized for VLSI interconnect structures but not exclusively, as long as the structure is of Manhattan geometry and embedded in a uniform dielectric material.
    Downloads: 1 This Week
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  • 14
    NLOPredict
    NLOPredict is a nonlinear optical prediction and data analysis tool. Nonlinear optical measurements can yield information about the structure of crystals, and orientation of molecules at surfaces and interfaces.
    Downloads: 0 This Week
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  • 15
    Guanxi is a robust analysis and simulation application for Social Network Analysts. Guanxi allows researchers in the field to create, import, and export an endless array of networks, analyze their structure, and run custom dynamics over them.
    Downloads: 0 This Week
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  • 16
    Python library for a fast and flexible graph data structure.
    Downloads: 0 This Week
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  • 17
    File-Spector is a small, fast and easy to use binary file analyzer and Inspector. It allows the users to format a complete binary file structure and then use it to read any binary file that matches the specified format.
    Downloads: 1 This Week
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