Open Source MATLAB Data Management Systems
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MATLAB Data Management Systems
View 4361 business solutionsBrowse free open source MATLAB Data Management Systems and projects below. Use the toggles on the left to filter open source MATLAB Data Management Systems by OS, license, language, programming language, and project status.
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GMAT
General Mission Analysis Tool
The General Mission Analysis Tool (GMAT) is an open-source tool for space mission design and navigation. GMAT is developed by a team of NASA, private industry, and public and private contributors. The GMAT development team is pleased to announce the release of GMAT version R2026a. For a complete list of new features, compatibility changes, and bug fixes, see the R2026a Release Notes in the Users Guide. -
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EEGLAB
EEGLAB is an open source signal processing environment
EEGLAB is an open source, MATLAB-based interactive environment for analyzing electrophysiological signals such as EEG and MEG. It incorporates powerful tools for data import, preprocessing, independent component analysis (ICA), time-frequency analysis, artifact rejection, and visualization—all within a GUI framework that also supports scripting and plugin extensions. EEGLAB is an open source signal processing environment for electrophysiological signals running on Matlab and Octave (command line only for Octave). This folder contains original Matlab functions from the EEGLAB (formerly ICA/EEG) Matlab toolbox, all released under the Gnu public license (see eeglablicence.txt). See the EEGLAB tutorial and reference paper (URLs given below) for more information. All distributed EEGLAB functions (admin, sigproc, pop, misc). -
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OpenFace
A state-of-the-art facial behavior analysis toolkit
OpenFace is an advanced facial behavior analysis toolkit intended for computer vision and machine learning researchers, those in the affective computing community, and those who are simply interested in creating interactive applications based on facial behavior analysis. The OpenFace toolkit is capable of performing several complex facial analysis tasks, including facial landmark detection, eye-gaze estimation, head pose estimation and facial action unit recognition. OpenFace is able to deliver state-of-the-art results in all of these mentioned tasks. OpenFace is available for Windows, Ubuntu and macOS installations. It is capable of real-time performance and does not need to run on any specialist hardware, a simple webcam will suffice. -
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LabPlot
Data Visualization and Analysis
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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YALMIP
MATLAB toolbox for optimization modeling
MATLAB toolbox for optimization modeling. -
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TIGRE
TIGRE: Tomographic Iterative GPU-based Reconstruction Toolbox
TIGRE is an open-source toolbox for fast and accurate 3D tomographic reconstruction for any geometry. Its focus is on iterative algorithms for improved image quality that have all been optimized to run on GPUs (including multi-GPUs) for improved speed. It combines the higher-level abstraction of MATLAB or Python with the performance of CUDA at a lower level in order to make it both fast and easy to use. TIGRE is free to download and distribute: use it, modify it, add to it, and share it. Our aim is to provide a wide range of easy-to-use algorithms for the tomographic community "off the shelf". We would like to build a stronger bridge between algorithm developers and imaging researchers/clinicians by encouraging and supporting contributions from both sides to TIGRE. -
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Eventer
Rapid, unbiased, reproducible analysis of synaptic events
Eventer is a programme designed for the detection of spontaneous synaptic events measured by electrophysiology or imaging. The software combines deconvolution for detection, and variable length template matching approaches for screening out false positive events. Eventer also includes a machine learning-based approach allowing users to train a model to implement their ‘expert’ selection criteria across data sets without bias. Sharing models allows users to implement consistent analysis procedures. The software is coded in MATLAB, but has been compiled as standalone applications for Windows, Mac and Linux. Please visit the official Eventer website for more info https://eventerneuro.netlify.app/ While the paper is in preparation, please cite as; Winchester, G., Liu, S., Steele, O.G., Aziz, W. and Penn, A.C. (2020) Eventer. Software for the detection of spontaneous synaptic events measured by electrophysiology or imaging. http://doi.org/10.5281/zenodo.3991676 -
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ExpSuite is a software framework for applications to perform psychoacoustical experiments. ExpSuite allows acoustic and electric stimulation for normal hearing and cochlear implant listeners, respectively.
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
Reconstruction and Visualization from a Single Projection (ReViSP) tool: a 3D volume rendering method we developed to reconstruct the 3D shape of multicellular spheroids, besides estimating the volume by counting the voxels (3D pixels) fully included in the 3D surface. ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later versions. Please, when using this software, cite these articles: (a) F. Piccinini, et al., Cancer multicellular spheroids: Volume assessment from a single 2D projection. Computer Methods and Programs in Biomedicine, 118(2):95–106, 2015. (b) F. Piccinini, et al., Single-image based methods used for non-invasive volume estimation of cancer spheroids: a practical assessing approach based on entry-level equipment. Computer Methods and Programs in Biomedicine, 135:51-60, 2016. -
Custom VMs From 1 to 96 vCPUs With 99.95% UptimeLive migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.
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JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
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SPAT
Satellite Power Analysis Tool
# Satellite Power Analysis Tool (SPAT) The tool was originally created to aid during the Satellite Power System design process, however it has evolved to a Satellite Missoin design tool. The user defines the mission and the Satellite design paramenters and, the tool will output: - Power analysis - Battery charge/discharge analysis - Link budget - Ground track coverage - Ground station visibility SPAT has been developed in MATLAB and MCR (Matlab runtime) is required. SPAT is pre-compiled and currently available for MacOS and Windows email: aitorvs(AT)gmail.com -
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flow visualization toolbox
matlab 2D image processing GUI toolbox for flow visualization
A general flow visualization Matlab toolbox for image processing of some common planar/surface visualization techniques from PLIF (Planar laser induce fluorescence) for tracer distribution, BOS (background oriented Schlieren) for density, TSLC (Temperature sensitive liquid crystal) for thermal and PSP (Pressure sensitive paint) pressure distribution measurement. This work is part of author's PhD study, under Dr S. Zhong @ the University of Manchester's supervision, guidance and support. Both GUI and command line interface are provided for newbie and advanced user. Image can be processed into contour image, matlab mat and tecplot data. This toolbox can be conveniently extended for 2D image processing in other disciplines, for example, surface stress measurement, inferred thermograph, PIV. See developer guide for HOWTO. * example project.mat and calib.mat use abs path will not work for you directly. pl. rebuild yours according to my youtube tutorial -
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Overhead Imagery Research Data Set (OIRDS) - an annotated data library & tools to aid in the development of computer vision algorithms
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LAVA for AFM
Lloyd's Algorithm-based Volumetric Analysis for AFM Images
This MATLAB-based program enables analysis of AFM images. In particular, it allows the user to measure the volume of all distinguishable features in an image and to isolate and sort those particles. As the name implies, LAVA uses Lloyd's Algorithm, also known as k-means sorting, to identify a small set of volumes representative of the actual distribution of particle in the image. Although developed for determining feature volume, LAVA is also completely compatible with other types of image analysis, such as fluorescence intensity. Work is in progress to provide three-channel functionality, allowing comparison of relative intensity of red, green, and blue channels in multi-color images. -
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REST4roots
Evaluation software for shovelomics images
Root Estimator for Shovelomics Traits (REST) is a software developed for an automated or semi automated high-throughput analysis of root system traits form high quality RGB pictures. Standardized image acquisition is strongly recommended and briefly described in the manual which you can get here for free http://plantscience.psu.edu/research/labs/roots/publications/overviews/next-generation-shovelomics-set-up-a-tent-and-rest -
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Herramientas informáticas para auxiliar en el proceso de identificación de parámetros dinámicos en sistemas estructurales. Desde el pre procesamiento hasta la elección y ratificación de modos.
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KARDIA ("heart" in Greek) is a Matlab software with a graphic user interface designed for the analysis of cardiac interbeat interval data.
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MS2Browser
LC-MS/MS data browser designed for siderophore analysis
MS2Browser is a tool for interactive pre-processing, analysis and visualization of LC-MS/MS data. Input is an mzXML file with centroided LC-MS/MS data. The program is written in MatLab and it was designed for the analysis of siderophores (iron transporting small molecules) in bacterial media. Some of the functionality and use of MS2Browser is described as part as an open-access book chapter: http://www.intechopen.com/books/applications-from-engineering-with-matlab-concepts/small-molecule-lc-ms-ms-fragmentation-data-analysis-and-application-to-siderophore-identification A siderophore structural database assembled for this project can be found alongside the MS2Browser software (.cfw format to be used with ChemBioFinder(TM) ). NOTE: The program is written for personal use to assist siderophore analysis using high-resolution LC-MS/MS data. Please contact me if you have any questions about its use, bugs, etc. -
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Marine Mammal Acoustic DCL
Advanced acoustic detection, classification and localization
Advanced detection, classification and localization (DCL) of marine mammals and passive acoustic monitoring (PAM). Code is being developed as Matlab routines, interfaces for Ishmael (http://www.bioacoustics.us/ishmael.html), and in other formats. -
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
Reconstruction and Visualization from Multiple Sections (ReViMS), an open-source, user-friendly software for automatically estimating volume and several other features of 3D multicellular aggregates (i.e., cancer spheroid, zebrafish, fruit fly). ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope. It provides a number of tools for: (a) segmenting z-stacks of fluorescence images; (b) reconstructing the 3D surface of the aggregates and estimating several features (including the volume). ReViMS is written in MATLAB (The MathWorks, Inc., Massachusetts, USA). It is an open-source tool and the source code is freely available at: http://sourceforge.net/p/revims Requirements: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. -
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SPIW - Scanning Probe Image Wizard
Scanning Probe Image Wizard - MATLAB Toolbox
SPIW is a MATLAB toolbox, for automated processing of scanning probe microscope images. Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution. SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images. For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific Instruments. A related open-source project SPIEPy (https://pypi.python.org/pypi/SPIEPy/) is developing a python library to for automated SPM imaged enhancement. SPIEPy brings many SPIW algorithms to the Python user. -
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Tool for visualizing artificial neural networks in Matlab using the Matlab Neural Network Toolbox (see wiki for details).
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"Voxel Surface" is a MATLAB program that creates exact surfaces from 3-D voxel data such as from MRI and CT Scan. It replaces MATLAB isosurface, isocap and isonormals functions, which have several deficiencies. See README file and Gallery pictures.
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The purpose of this project is to implement a java program that can show/edit Neural Network objects made in matlab.
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ATLAS_mPBPK
Modeling and Simulation of mPBPK models
ATLAS mPBPK is a MATLAb-based tool for modeling and Simulation of minimal Physiology Based Pharmacokinetic (mPBPK) models of small and large molecules. The tool enables the users to perform: i) PK data visualization, ii) simulation, iii) parameter optimization, and iv) local sensitivity analysis (SA) of mPBPK models in a simple and efficient manner.
