Download
GoIFISH has been developed for the analysis of IFISH (Immunofluorescence + Fluorescence in situ Hybridisation) images, performing nuclear, membrane and spot detection.
Users can manually edit segmentation results, perform background adjustments, construct heatmaps, topology maps, and perform cell classification. All results can be exported for further analysis.
GoIFISH has been developed in MATLAB, however binaries are provided to run the program outside of the MATLAB environment. Source code is also available for download.
To cite this software:
"GoIFISH: A system for the quantification of single cell heterogeneity from IFISH images"
Trinh A, Rye IH, Almendro V, Helland A, Russness HG, Markowetz F
May 2014
Features
- Automatic segmentation of nuclei, membranes and spots
- Manual refinement of segmentation results
- Generation of heatmaps and topology maps
- Real time cell classification
- Background intensity adjustment to account for auto-fluorescence
- Export segmentation results, cell properties in .png/.txt or .mat format for further analysis
- Save current project to continue at later date
Project Samples
License
GNU General Public License version 2.0 (GPLv2)Follow GoIFISH
Other Useful Business Software
$300 Free Credits to Build on Google Cloud
Start your next project with $300 in free Google Cloud credit. Spin up VMs, run containers, query petabytes in BigQuery, or build agents with Gemini Enterprise Agent Platform. Once your credits are used, keep building with 20+ always-free tier products including Compute Engine, Cloud Storage, GKE, and Cloud Run functions. No commitment required—just sign up and start building.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of GoIFISH!
