Search Results for "maldi-tof"
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Showing 27 open source projects for "maldi-tof"
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NYX series depth sensor camera is powered by the Nuvoton (formerly Panasonic) pulse iToF chip. Enhances the ability for long-distance measurement and stronger environmental robustness. Specially designed for situations that required a wide dynamic range and wide field of view.
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SpecProc
SpecProc is a general processing tool for MassLynx data.
For the new Browser Support and Internet Explorer retirement see https://sourceforge.net/projects/specproc2browser/ NEW! At last, the mighty SpecProc is available to all. This is version 1.14 packed with new features that nobody asked for. This includes tof and quad data, spectrum and chromatogram extraction. Note that methods (olp) files created with earlier versions might throw an error when you try an import them. But hey, a small price to pay. They can only ever have a few things in them anyway. SpecProc is a general processing tool for MassLynx data. With you can query spectra and ask questions about the data’s intensity, resolution and mass difference. ... -
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Xmaldi
Viewing collections of MALDI spectra and perform PCA and DFA analyses
Xmaldi is an application for viewing collections of MALDI spectra and perform PCA and DFA analyses on them (Python 3 version). For more information, you can have a look at the README.md file in the source code tree: https://sourceforge.net/p/lp-csic-uab/xmaldi3/code/ci/default/tree/README.md -
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xMariner
xMariner automates the analysis of MALDI spectra and report generation
xMariner automates the analysis of MALDI spectra and report generation -
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Mass-Up
MALDI-TOF data analysis tool
Mass-Up is an Open-Source mass spectrometry utility for proteomics designed to support the preprocessing and analysis of MALDI-TOF mass spectrometry data. Mass-Up includes several tools and operations to load, preprocess and analyze MALDI-TOF data. -
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TOFSIMS
R/Bioconductor toolkit for mass spectrometry data
...For data exploration and dimensionality reduction, it includes multivariate methods common in the ToF-SIMS community: PCA (Principal Component Analysis), MCR (Multivariate Curve Resolution), MAF (Maximum Autocorrelation Factors), and MNF (Minimum Noise Fraction). It also interoperates with Bioconductor’s imaging stack (e.g. EBImage) so users can apply segmentation and image analysis operations on mass images. -
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MSqBAT
Label-free protein quantification for LC-MS
...Christoph Rösli at the Heidelberg Institude for Stem Cells and Experimental Medicine (HI-STEM) and the German Cancer Research Center (DKFZ). It’s main features are 1) Label-free, MS1-based quantification 2) Support both LC-MALDI-MS- as well as LC-ESI-MS data 3) Supports both GeLC-MALDI-MS- and GeLC-ESI-MS data 4) Convenient, graphical user interface Acknowledgements The development of MSqBAT is kindly supported by YourKit Java Profiler. -
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NICOS
Client/Server based experiment and instrument control system
Client/Server based experiment and instrument control system -
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GlycoMaid is an application for automatically annotating N-glycan MALDI-TOF MS data with graphic user interface.
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MetaOpen
Metabolomics Bioinformatics Tools
...We use a number of high-throughput analytical platforms including multidimensional liquid chromatography-mass spectrometry (MDLC-MS) for proteomics, and for metabolomics; liquid chromatography-mass spectrometry (LC-MS), and comprehensive two-dimensional gas chromatography-mass spectrometry (GCxGC/TOF-MS). Each type of analysis affords limited analyte coverage of molecules present in a patient sample and therefore provides only a partial molecular profile for an individual patient. These diverse analytical data must be integrated with advanced bioinformatics methods for accurate evaluation of health and detection of disease susceptibility. -
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mAPV
modified Asymmetric Pseudo-Voigt Model
A new peak detection algorithm for MALDI mass spectrometry data based on a modified Asymmetric Pseudo-Voigt model -
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cusAPV
customized Asymmetric Pseudo-Voigt Model
A new peak detection algorithm for MALDI mass spectrometry data based on a customized Asymmetric Pseudo-Voigt model -
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QuickNXS
Polarized ToF reflectivity raw data analysis tool
Data evaluation tool for the magnetism reflectometer at the spallation neutron source (BL-4A@SNS). Reads raw nexus files (HDF5) of histogrammed or event mode data to create reflectivity curves and 2D Q-maps. -
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Welcome to MultiGlycan MultiGlycan helps user to gather glycan profile information from LC-MS Spectra. It also reports quantity of specific glycan composition. We've developed two different versions of MultiGlycan: one for MALDI, and the other one for ESI. The MALDI version deconvolutes regular and overlapping glycans using simple model matching; The ESI version extracts glycans using adduct information. Currently, it can be executed on Windows XP, Vista, 7 with .net framework 2.0 installed. "Automated Annotation and Quantification of Glycans Using Liquid Chromatography Mass Spectrometry (LC-MS)." ...
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DressCode
A virtual mirror using OpenGL and a SoftKinetic ToF camera.
We propose a virtual mirror that combines computer vision, computer graphics and physical based simulation. A time-of-flight camera mounted on a vertical monitor provides RGB (red-green-blue) and depth data of the scene. The system uses this retrieved data to construct a 3D model of the user. The final rendered scene omits the constructed 3D model, and projects the rendered garment on the user's image onto the monitor to give the user the impression that (s)he is wearing the garment. -
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Source Synchro
Synchronise your MassLynx ipr settings
Synchronise your MassLynx ipr settings across Modes and Polarities. No more forgetting to change the temperature on High Resolution setting! Intended for Waters ToF Mass Spectrometers -
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ResCalc3
Spectral resolution calculator for MassLynx
...ResCalc3 determines and reports the spectral resolution from a list of mass intensity pairs or MassLynx spectrum. The list can be either in the clipboard or in a text file. It is intended for use with data from either ToF or Quadrupole Instruments and reports the resolution of the most intense peak in the data. The resolution can be optionally compared to a threshold you specify and the result is displayed as Pass/Fail using a tick or cross alongside the resolution. You can choose to display a graph which shows the position and threshold result overlaid on the data. ... -
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Text On
The Open-source Text Editor powered by Jordan Fung (The GLMET Project)
TextOn is a open-source text editor with basic features like cut copy paste, additional features like Text to Speak (Speech SDK). -
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RICmerge
Improved Isobaric Label Reporter Ion Assignment
This script and underlying data are in support of the manuscript entitled "Improved reporter ion assignment of raw isobaric stable isotope labeled LC-MALDI-TOF/TOF MS/MS spectral data for quantitative proteomics". Authors: Thomas Jakoby, Andreas Tholey and Bart H.J. van den Berg* * = corresponding author bvdberg@live.com -
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MetCore
Metabolomics Bioinformatics Tools
...We use a number of high-throughput analytical platforms including multidimensional liquid chromatography-mass spectrometry (MDLC-MS) for proteomics, and for metabolomics; liquid chromatography-mass spectrometry (LC-MS), and comprehensive two-dimensional gas chromatography-mass spectrometry (GCxGC/TOF-MS). Each type of analysis affords limited analyte coverage of molecules present in a patient sample and therefore provides only a partial molecular profile for an individual patient. These diverse analytical data must be integrated with advanced bioinformatics methods for accurate evaluation of health and detection of disease susceptibility. -
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A new software suite, ICPLQuant, has been developed to accurately quantify ICPL-labeled peptides on the MS level during LC-MALDI and peptide mass fingerprint experiments. A version for Orbitrap ESI MS is now available!
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This software converts native Bruker MALDI TOFMS FID format data files to JCAMP format so they may be displayed using JSpecView (or another JCAMP file viewer). Appropriate parameters are extracted from the original Bruker parameter files and saved.
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BioSunMS, a flexible software platform for submission, management, retrieval of sample and MS data(MALDI or SELDI), and clinical proteomics-related statistical analysis. BioSunMS integrated all functions into a user-friendly desktop RCP application.
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PrepMS is a simple-to-use graphical application for MS data preprocessing, peak detection, and visual data quality assessment. PrepMS is a compiled stand-alone application. Project homepage: http://stat.tamu.edu/~yuliya/prepMS.html
