Search Results for "command line tool" - Page 3
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Showing 279 open source projects for "command line tool"
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Wooey
A Django app that creates automatic web UIs for Python scripts
Wooey is a simple web interface to run command line Python scripts. Think of it as an easy way to get your scripts up on the web for routine data analysis, file processing, or anything else. The project was inspired by how simply and powerfully sandman could expose users to a database and by how Gooey turns ArgumentParser-based command-line scripts into WxWidgets GUIs. Originally two separate projects (Django-based djangui by Chris Mitchell and Flask-based Wooey by Martin Fitzpatrick) it has been merged to combine our efforts. ... -
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Weave Scope
Monitoring, visualization and management for Docker and Kubernetes
...View metrics, tags and metadata within the context of a process, container, service or host. Effortlessly navigate from processes inside your container to Docker hosts. Stop, start, pause and restart containers. View logs. Launch a command line. All without leaving Scope. Choose an overview of your container infrastructure, or focus on a specific microservice. Easily identify and correct issues to ensure the stability and performance of your containerized applications. -
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MS-Helios
MS-Helios: A Circos wrapper to visualize multi-omic datasets
...To provide a more holistic view, we recently introduced circular proteome maps (CPMs). However, the CPM construction requires prior data transformation and extensive knowledge of the Perl-based tool, Circos. We present MS-Helios, an easy to use command line tool with multiple built-in data processing functions, allowing non-expert users to construct CPMs or in general terms circular plots with a non-genomic basis. MS-Helios automatically generates data and configuration files to create high quality and publishable circular plots with Circos. -
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ADaMSoft
Open Source and data mining software
ADaMSoft is a free and Open Source Data Mining software developed in Java. It contains data management methods and it can create ready to use reports. It can read data from several sources and it can write the results in different formats. -
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PINCIS
PINCIS.pl is a Perl bioinf. script to analyze PICS data
PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be concurrently used to generate cleavage specificity visualizations like the iceLogo (https://iomics.ugent.be/icelogoserver/create). -
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ccplot
CloudSat and CALIPSO plotting tool
ccplot is an open source command-line program for plotting profile, layer and earth view data sets from CloudSat, CALIPSO and Aqua MODIS products. -
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ApplicationBuilder.jl
Compile, bundle, and release julia software
Turn your Julia program into a standalone, distributable, statically-compiled "App". ApplicationBuilder compiles a Julia program and bundles it up into a distributable application, on macOS, Windows and Linux! After building, your users can download your application and run it without having Julia installed. -
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Luminance HDR
Complete solution for HDR photography
Luminance HDR is a complete suite for HDR imaging workflow. It provides a wide range of functionalities, during both the fusion stage and the tonemapping stage. Its graphical user interface, based on Qt5, runs on a variety of platforms, such as Microsoft Windows, Mac OS X 10.9 and later and several Unix flavors (Linux, FreeBSD and others). Input images can be supplied in multiple formats, from JPEG to RAW files. In the same way, output can be saved in many different formats as well, from... -
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MyCAT
Active, high-performance open source database middleware
MyCAT is an Open-Source software, “a large database cluster” oriented to enterprises. MyCAT is an enforced database which is a replacement for MySQL and supports transaction and ACID. Regarded as MySQL cluster of enterprise database, MyCAT can take the place of expensive Oracle cluster. MyCAT is also a new type of database, which seems like a SQL Server integrated with the memory cache technology, NoSQL technology and HDFS big data. And as a new modern enterprise database product, MyCAT is... -
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Data Science at the Command Line
Data science at the command line
Command Line by Jeroen Janssens, published by O’Reilly Media in October 2021. Obtain, scrub, explore, and model data with Unix Power Tools. This repository contains the full text, data, and scripts used in the second edition of the book Data Science at the Command Line by Jeroen Janssens. This thoroughly revised guide demonstrates how the flexibility of the command line can help you become a more efficient and productive data scientist. ... -
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Spectral Python
A python module for hyperspectral image processing
Spectral Python (SPy) is a python package for reading, viewing, manipulating, and classifying hyperspectral image (HSI) data. SPy includes functions for clustering, dimensionality reduction, supervised classification, and more. -
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assetfinder
Find domains and subdomains related to a given domain
assetfinder is a reconnaissance tool designed to discover domains and subdomains associated with a target domain by aggregating data from multiple public sources. It queries services such as certificate transparency logs, threat intelligence platforms, and passive DNS providers to build a comprehensive list of related assets. The tool is widely used in bug bounty programs and penetration testing to map an organization’s external attack surface. -
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TSA_CRAFT
Automatic command line tool for TSA data analysis
DSF is a high-throughput platform of TSA assay to screen various conditions that affect protein stability. To facilitate TSA data analysis, we developed an automatic tool "TSA-CRAFT". TSA-CRAFT was developed by integrating PERL script and Gnuplot. PERL scripts manage the entire workflow and data processing procedures of TSA data analysis. On the other hand, Gnuplot takes over the curve fitting and result presentation works. All analysed results are coded in an html file that can be easily... -
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Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
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AQUATONE
A tool for domain flyovers
Aquatone is a tool for visual inspection of websites across a large amount of hosts and is convenient for quickly gaining an overview of HTTP-based attack surface. Aquatone is designed to be as easy to use as possible and to integrate with your existing toolset with no or minimal glue. Aquatone is started by piping output of a command into the tool. -
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md2googleslides
Generate Google Slides from markdown
Generate Google Slides from markdown & HTML. Run from the command line or embed in another application. This project was developed as an example of how to use the Slides API. While it does not yet produce stunningly beautiful decks, you are encouraged to use this tool for quickly prototyping presentations. The first time the command is run you will be prompted for authorization. OAuth token credentials are stored locally in a file named ~/.md2googleslides/credentials.json. ... -
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julia-vim
Vim support for Julia.
...This plug-in adds some functionality to substitute LaTeX code sequences (e.g. \alpha) with corresponding Unicode symbols (e.g. α). By default, these substitutions must be triggered explicitly by pressing the Tab key, as in the Julia command line (the REPL); however, an automatic, as-you-type mode can also be activated, and a method based on keymap is also available. This feature also works in command mode, e.g. when searching the files with the / or ? commands, but the as-you-type mode is not available (the keymap-based version works though, and it also works with some Vim commands like f and t). ... -
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MarDRe
MapReduce-based tool to remove duplicate DNA reads
MarDRe is a de novo MapReduce-based parallel tool to remove duplicate and near-duplicate DNA reads through the clustering of single-end and paired-end sequences from FASTQ/FASTA datasets. This tool allows bioinformatics to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset. MarDRe is the Big Data counterpart of ParDRe (link above), which employs HPC technologies (i.e., hybrid MPI/multithreading) to reduce runtime on multicore systems.... -
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DocOpt.jl
Command line arguments parser
DocOpt.jl is a port of docopt written in the Julia language. docopt generates a command-line arguments parser from human-readable usage patterns. The DocOpt module exports just one function, docopt, which takes multiple arguments but all of them except the first one are optional. -
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SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
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HSRA
Hadoop spliced read aligner for RNA-seq data
HSRA is a MapReduce-based parallel tool for mapping reads from RNA sequencing (RNA-seq) experiments. RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a... -
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MaRC (Map Reprojections and Conversions) is a C++ library and program designed to produce map projections of bodies thay may be represented as oblate spheroids from digital images (e.g. FITS images) or computed values (e.g. incidence and emission angles).
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The SourceForge OpenRasMol project is an adjunct to the RasMol and OpenrasMol project at http://rasmol.org. It is hoped that the SourceForge OpenRasMol project will provide a convenient focal point for active collaborative contributions.
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scriptLattes is an open-source system to create academic reports of groups based on curricula vitae of the Brazilian Lattes Database.
