197 programs for "bio-bwa-files" with 2 filters applied:

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  • 1
    ReTest.jl

    ReTest.jl

    Testing framework for Julia

    ReTest is a testing framework for Julia allowing defining tests in source files, whose execution is deferred and triggered on demand. This is useful when one likes to have definitions of methods and corresponding tests close to each other. This is also useful for code that is not (yet) organized as a package, and where one doesn't want to maintain a separate set of files for tests. Filtering run testsets with a Regex, which is matched against the descriptions of testsets. This is useful...
    Downloads: 0 This Week
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  • 2
    Tokenize.jl

    Tokenize.jl

    Tokenization for Julia source code

    Tokenize is a Julia package that serves a similar purpose and API as the tokenize module in Python but for Julia. This is to take a string or buffer containing Julia code, perform lexical analysis and return a stream of tokens.
    Downloads: 0 This Week
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  • 3
    Jmol

    Jmol

    An interactive viewer for three-dimensional chemical structures.

    Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other...
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    Downloads: 1,632 This Week
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  • 4
    GeoTools, the Java GIS toolkit

    GeoTools, the Java GIS toolkit

    Toolkit for working with and mapping geospatial data

    GeoTools is an open source (LGPL) Java code library which provides standards compliant methods for the manipulation of geospatial data. GeoTools is an Open Source Geospatial Foundation project. The GeoTools library data structures are based on Open Geospatial Consortium (OGC) specifications.
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    Downloads: 397 This Week
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  • 5
    MathGL

    MathGL

    A library for scientific data visualization

    A free cross-platform library of fast C++ routines for the plotting of up to 3-ranged data. It can export to bitmap and vector EPS/SVG files. There are window interfaces (GLUT/FLTK/Qt) and console tools. MathGL can be used from C/Fortran/Python/Octav/Lua
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    Downloads: 95 This Week
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  • 6
    Java Treeview - An Open Source, Extensible Viewer for Microarray Data in the PCL or CDT format
    Downloads: 65 This Week
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  • 7
    Eulumdat_3D - QLumEdit2

    Eulumdat_3D - QLumEdit2

    show and edit eulumdat files

    Eulumdat_3D the better Eulumdat viewer and editor. You can view ldt files as 3D ,compare two luminaires, print a simple datasheet. From given light distribution you can create different ldt files depending on light flux and CCT also as app under https://play.google.com/store/apps/details?id=com.riloc.eulumdat
    Downloads: 13 This Week
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  • 8
    Dependency Finder
    Extracts dependencies and OO metrics from Java class files produced by most Java compilers. Computes API differences between versions. No source needed. Includes both Swing and command-line interfaces, with XSL stylesheets for formatting output.
    Downloads: 6 This Week
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  • 9

    GETL

    ETL engine based on Groovy

    P.S. Dear friends. Repository migration to https://github.com/ascrus/getl . You can download jar file from this site or maven. GETL - based package in Groovy, which automates the work of loading and transforming data. His name is an acronym for «Groovy ETL». GETL is a set of libraries of pre-built classes and objects that can be used to solve problems unpacking, transform and load data into programs written in Groovy, or Java, as well as from any software that supports the work with...
    Downloads: 3 This Week
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  • 10
    PlateEditor

    PlateEditor

    PlateEditor, a free web application to work with multi-well plates

    PlateEditor is a free web application to work with multi-well plates, from creation of layouts to data visualization and aggregation. It is primarily designed as a tool to help scientists working in the field of biology to simplify and fasten the process of data analysis. It is fully client-side: files are never transferred to the server, ensuring complete security and privacy of research data. It doesn't require any installation. - PlateEditor is available at this address: https...
    Downloads: 0 This Week
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  • 11
    mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
    Downloads: 0 This Week
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  • 12
    Autoplot

    Autoplot

    Autoplot is an interactive browser for data on the web

    Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats.
    Downloads: 0 This Week
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  • 13
    QuickPlot

    QuickPlot

    Simple user interface for gnuplot aimed for reflectometry data

    Graphical user interface for gnuplot to create publication quality figure very quickly. It supports templates for fast formatting of graphics, different plot styles, insets, axis and label options. One important feature is storing metadata in png and pdf files that can be used to reload any graph saved with QuickPlot.
    Downloads: 0 This Week
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  • 14
    VANESA
    This project moved to GitHub in 2021 and is available at: https://cbrinkrolf.github.io/VANESA/ This tool is a platform-independent software to create individual pathways and to examine biological networks of distributed, heterogeneous data sources, e.g. KEGG, BRENDA. VANESA also offers Petri net modeling of extended hybrid Petri nets which can be also simulated using the OpenModelica framework.
    Downloads: 0 This Week
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  • 15
    Perceptron

    Perceptron

    The birth of modern video feedback art.

    ... files) * loads user photographs or captures screen and webcam input * has user interface based on multiple mouse cursors, and almost the entire keyboard * has multiple windows and fullscreen mode * takes complex geometric transforms as input * applies numerous coloring techniques * smoothly transforms fractals and creates endless psychedelic journeys * resonates with the human perception Visit the Perceptron home page at http://perceptron.sourceforge.net
    Downloads: 10 This Week
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  • 16
    cdfread is a program for people wirking with mass spectrometry datasets. cdfread implements the routines to read mass spectra and mass chromatograms from data files in netCDF ("Andi-MS") format. Centroid and profile data are supported.
    Downloads: 0 This Week
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  • 17
    Gabedit is a Graphical User Interface for FireFly (PC-Gamess), Gamess-US, Gaussian, Molcas, Molpro, MPQC, NWChem, OpenMopac, Orca, PSI4 and Q-Chem computational chemistry packages.
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    Downloads: 146 This Week
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  • 18
    Open Source Data Quality and Profiling

    Open Source Data Quality and Profiling

    World's first open source data quality & data preparation project

    ..., Meta Data Discovery, Anomaly Discovery, Data Cleansing, Reporting and Analytic. It also had Hadoop ( Big data ) support to move files to/from Hadoop Grid, Create, Load and Profile Hive Tables. This project is also known as "Aggregate Profiler" Resful API for this project is getting built as (Beta Version) https://sourceforge.net/projects/restful-api-for-osdq/ apache spark based data quality is getting built at https://sourceforge.net/projects/apache-spark-osdq/
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    Downloads: 31 This Week
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  • 19
    QtiPlot
    QtiPlot is a user-friendly, platform independent data analysis and visualization application similar to the non-free Windows program Origin.
    Downloads: 73 This Week
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  • 20
    JSpecView Project

    JSpecView Project

    Spectroscopy Viewer

    The JSpecView Project initially provided JAVA applets for the display of JCAMP-DX and AnIML/CML spectral files. The source and binary files are available via the Code (sourceforge SVN) and Files menu options. See the WIKI pages (Hosted Apps) for more detail. Beginning September 2018 all code changes are being handled via the Jmol Sourceforge page. The codes has been fully merged and JSmol the JavaScript/HTML5 version of Jmol now includes the non-Java version of JSpecView.
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    Downloads: 30 This Week
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  • 21
    PyX is a Python package for the creation of EPS, PS, PDF and SVG files. It combines an abstraction of the PostScript drawing model with a TeX/LaTeX interface. Complex tasks like 2d and 3d plots in publication-ready quality are built out of these primitives.
    Downloads: 0 This Week
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  • 22
    ProteoWizard
    ProteoWizard development moved to GitHub in 2018. The ProteoWizard Library is a set of software libraries and tools for rapid development of proteomics data analysis software. The libraries are cross-platform and built from the ground up using modern C++ techniques.
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    Downloads: 19 This Week
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  • 23
    Lata is a file format to store CFD results, with special care for huge datasets. This project provides tools for manipulate and convert the lata files. This project is part of the VisIt plugin reader. The Snorky3D sofware is presented in the following conference communication: Visualisation of CFD computations: millions of particles in real time with Snorky3D Visu 2012, september 2012, Paris, France http://visu2012.imag.fr/articles/mathieu.pdf
    Downloads: 0 This Week
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  • 24
    JPIV

    JPIV

    Particle Image Velocimetry

    JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/
    Downloads: 0 This Week
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  • 25
    SBML2LaTeX

    SBML2LaTeX

    A documentation and report generator for systems biological models

    SBML2LATEX is a tool to convert files in the System Biology Markup Language SBML) format into LATEX files. A convenient online version is available, which allows the user to directly generate report from SBML in form of PDF or TeX, which can be further processed to various file types including DVI, PS, EPS, GIF, JPG, or PNG. SBML2LATEX can also be downloaded and used locally in batch mode or interactively with its Graphical User Interface or several command line options. The purpose...
    Downloads: 0 This Week
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