Search Results for "program files" - Page 2
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Showing 54 open source projects for "program files"
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JBerd
Java tools for decoding and manipulating BER encoded ASN.1 Files
A simple Java ASN BER decoder and profiler A tool for easy manipulation of BER encoded files. An "awk" for ASN.1 BER (for Unix people) or maybe a "notepad" for ASN.1 BER (for Windows people). Jberd (Java BER decoder) is a lightweight BER decoder and associated tools for interpreting and processing BER encoded ASN.1 files. The following facilities are provided: • JBerd Profiler. A tool for profiling the contents of BER encoded files • JBerd Flattener. A tool for converting BER... -
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...ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract
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PhaseIt
Graphical PDF Library
PhaseIt is a PDF database program for your literature projects. It allows to import PDFs using simple drag-and-drop and offers fast, graphical categorization of your files, as well as easy access via your favorite installed PDF reader. -
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HomSI
Homozygous Stretch Identifier from next-generation sequencing data
...Recently, the advent of next generation sequencing enables the concurrent identification of homozygous regions and the detection of mutations relevant for diagnosis, using data from a single sequencing experiment. In this respect, we have developed a novel tool that identifies homozygous regions using deep sequence data. Using *.vcf files as an input file, our program identifies the majo -
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Animp is an OpenGL program to display movies of particles in motion where the movies are produced by adding calls to animp library routines to simulation code written in either C++ or Fortran. Animp can also display molecules read from PDB files.
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Snp Viewer
A program for visualising Affymetrix SNP array data
A program for visualising Affymetrix SNP array data for identification regions of homozygosity. Written to aid autozygosity mapping and aid the discovery of potential disease loci. -
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mendelFix
Correction of SNP Mendelian errors in trio data
mendelFix is a Perl script for checking Mendelian errors in genome-wide SNP data of trio designs. The program takes 12-recoded PLINK PED and MAP files as input, and calculates a series of summary statistics for Mendelian errors, sets as missing offspring genotypes that present Mendelian inconsistencies, and implements a simplistic procedure to infer missing genotypes using parent information. The program can be easily incorporated in any pipeline for family-based SNP data analysis, and is distributed as free software under the GNU General Public License. ... -
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Decision Table Preprocessor
Ccide is a Decision Table preprocessor.
Ccide reads a source program, in one of several programming languages, expands all embedded decision tables, and generates the new, expanded source. Ccidew processes C language programs directly. The script, ccide, uses ccidew and m4, to process BASIC, JAVA, CC, C++, BASH, QB, VB, and EX(euphoria), source files containing embedded decision tables. -
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graphICs
graphICs is a converter transforming GDS II-data to Asymptote-code
...To use graphICs you need to download the JAR-file containing the program (no installation needed) and the MAP-file containing the color-information for the design (you can modify it or you create your own). To create graphic or PDF-files you need to download Asymptote from asymptote.sourceforge.net. Look at http://sourceforge.net/p/graphicsic/wiki/Usage/ for the Usage. You can download the actual version of graphICs, an example MAP-file and the Bachelor-Thesis about graphICs on the download page. -
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KinectCAD
Gesture based movement with CATIA
...Further there is a rudimentary speech recognition to change the rotating axes or to do some other helpful things. KinectCAD has been written in Visual C# 2010. The package includes the source code and binaries files. To start KinectCAD it is necessary to have a correct installed Microsoft Kinect. Also it is helpful if there is an installed Kinect SDK V1. But you can also download the Runtime at: http://download.microsoft.com/download/E/E/2/EE2D29A1-2D5C-463C-B7F1-40E4170F5E2C/KinectRuntime-v1.0-Setup.exe Important! The program is still in development! ... -
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Historic Urban Modeler (HUMmer) is a fully functional CAD program previously known as drawVision developed by HOK, Inc. This 3D polygonal modeler exports VRML, X3D, X3Dv and COLLADA files.
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Skittle Genome Visualizer
Skittle Development MOVED to Github
Skittle is a 2D visualization of genome sequence files. The program assigns four colors to the four nucleotides and text wraps the sequence to create a 2D picture based on the DNA sequence. Great for researching tandem repeats and chromosome structure. Compiled downloads available at http://dnaskittle.com/ Source maintained at https://github.com/josiahseaman/skittle -
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(dumb code! sorry!) A simple gravitation interaction visualization program, written in C (with use of OpenMotif GUI libraries and OpenGL). It displays the movement of a system of the material points which are interacting to each other. Warning! Currently program's verison with OpenMotif GUI is working wrong! It's displaying everything good, but does not simulate gravitation, actually. When author started writing this C-code, he was n00b, sorry :( And he has no time to rewrite...
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A Mac OS X framework implemented in Objective-C 2.0 that reads and parses ASCII DXF files. The framework returns an array of custom entity objects that can be used as needed by the program implementing this library.
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Vtkpost is a conversion program, for Windows, which converts solution files of the freely available finite element solver CalculiX CCX into vtk version 2.0 format for viewing in the scientific visualization environment ParaView.
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Wow Log Parser is a combat log parser for the game World of Warcraft. The purpose of the program is to parse the files generated with the /combatlog command. The source code can be found on: http://www.gurre.eu/wowlogparser/forum
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A library written in Java to manipulate GPX files. Also contained is a GUI program to visualize GPX files and the effects of manipulating them.
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Open-source Cube Files Manipulator Program (OpenCubMan)is a tool for computational chemists interested in performing operations on files with volumetric data representing wavefunctions or electron densities (often called cube files).
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Partystic Sheets is a simple MySQL manager that provides a friendly user interface to manage databases as sheets. This program prevents overwritting data when users are sharing sheets. You can export databases to XML files.
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This program reads a sample file and draws the a chart. To draw chart, JFreeChart library is being used. Sample files are .run, .rav, and .rtr files.
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GUI for creating Virtual networks with use of VMware Workstation and technology VMware Teams.This program lets you to create and save *.vmtm files which are used for storing information about VMware Virtual Team.
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pyVib is a Python-based molecular graphics visualizer. It allows visualizing vibrational modes (from latest gaussian fchk files), the related IR/VCD/Raman/ROA spectra, the GCM's (group coupling matrices) and ACP's (atomic contribution patterns).
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... visualizes EBNF (Extended Backus Naur Form). Therefore an .ebnf File is required, which contains rules written in EBNF. The program parses the rules, visualizes them as syntax diagrams and is able to generate .gif and .emf files for further use.
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RTK is a program devoloped in C to generate reports from a variety of sources (text files, SQL Servers, XML,... ) and to a variety of destinations (text files, graphical view, HTML, PostScript, etc).
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This program plots the solutions or approximations of systems of ordinary differential equations (ODEs). It makes use of opengl for the plotting, and the plots can be specified from data files or symbolically by specifying a system of equations.
