Search Results for "program files"
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Showing 45 open source projects for "program files"
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Altaxo Data Processing/Plotting Program
Data manipulation and plotting program with scripting
Altaxo is a data manipulation and plotting program written in C# for MS.NET. It is featuring worksheet views and plot views, a scripting language (currently C#) for data processing and automation, import of data from ASCII files or from images, export of graphs and embedding of graphs in other documents. -
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Jmol
An interactive viewer for three-dimensional chemical structures.
...Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other quantum chemistry programs. Files can be transferred directly from several databases, including RCSB, EDS, NCI, PubChem, and MaterialsProject. ... -
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Eleana
Program for the analysis of spectroscopic data, in particular EPR(ESR)
Eleana is a program for manipulating, modifying and analyzing various spectroscopic data, in particular electron paramagnetic resonance spectra. It allows you to import data from Bruker spectrometers such as Elexsys or EMX and data from any ASCII file or imported from the clipboard. The program is under constant development, but already has many functions implemented for spectral analysis. Some of the basic functions include: baseline corrections, filtering, spectral clipping, integration /... -
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MCE - Marching Cube ELD
Crystallographic software for displaying voxel maps - electron density
MCE is an crystallographic experimental program for 3D and 2D electron density map visualization. The software is mainly focused on visualization of ELD calculated from X-ray diffraction data of small molecules, but it will work for small proteins as well. Download the installation file (default download) or find in "Files" the zip-file with instant copy of the program which does not require the installation. -
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Charmol
Program for molecular graphics
Charmol is a cross-platform GUI/command-line based program for making high-quality pictures of molecular structures, nowadays working on Linux, MacOS and Windows. As output, it produces POV-Ray rendered images or files in VRML format. Charmol is capable of making pictures containing: - from small- to large-size molecules - more molecules together (different settings possible) - orbitals using molden and fchk files (GTO functions up to 'h' angular momentum supported) - surfaces using gaussian cube files (also color-mapped surfaces according to potential) - schematic representation of vibrations using arrows - user-defined arrows representing vectorial properties - measuring gauges - combinations of these features (more orbitals together, orbitals and arrows together etc.) ... -
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Windows Plot (wplot)
Windows Ploting Software
Windows ploting (wplot) Software wplot is a quick and easy to use Windows GUI software program for quickly creating and analyzing data plots. Create plots with millions of data points in seconds. Once the data is plotted you can easily use the many tools to explore your plot in great detail by zooming in/out, scrolling your plot and much more. Mutiple objects (data files/sets) can be plotted and overlaid. Objects can be individually hidden/viewed as the plot is studied. ... -
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XLibraryDisplay
A sequence analysis tool for protein engineering
XLibraryDisplay is an intuitive sequence analysis program optimized for protein engineering. It is ideal for all directed evolution platforms including phage, ribosome, and yeast display. Analysis can be quickly done on hundreds to thousands of sequences. Best suited for Sanger sequencing. Requirements: Microsoft Windows XP, 7, 8, or 10 and Excel 2007, 2010, 2013, or 2016 Described in Stafford et al JCIM 2014: http://pubs.acs.org/doi/abs/10.1021/ci500362s -
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cdfread is a program for people wirking with mass spectrometry datasets. cdfread implements the routines to read mass spectra and mass chromatograms from data files in netCDF ("Andi-MS") format. Centroid and profile data are supported.
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Graph Capture
Fast 2D charting from raw data
The software was designed for suitable chart creation. From text files or programs, that haven't visual charts themselves, data is passed to "Graph Capture" and plotted there. But you have to write Perl RegEx expressions to extract X and Y-values from raw data. Otherwise, you can request suitable filter templates here https://www.facebook.com/vlad.dubov.77. For making RegEx expressions short docs are also included in the program. -
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GPlates
Interactive visualization of plate tectonics.
GPlates is a plate-tectonics program. Manipulate reconstructions of geological and paleo-geographic features through geological time. Interactively visualize vector, raster and volume data. PyGPlates is the GPlates Python library. Get fine-grained access to GPlates functionality in your Python scripts. -
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QtiPlot is a user-friendly, platform independent data analysis and visualization application similar to the non-free Windows program Origin.
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Swave.java
Animation of a water wave outline breaking in one spot
Side view or transverse view animation of a water wave outline breaking in place. Java program uses 2 Bezier curves. No foam. Sliders change the shape of the initial wave. Stop/start at user's option. Wave, if it were moving, breaks from left to right. Bezier control points and lines show. Crest of wave is curved, initially. Realistic. Related files Wave.java and Bezier.java are included. -
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D_2D and D_3D are plotting programs with unique features, useful for data visualization and analysis. Input data should be provided as ASCII files formatted as x,y pairs or x,y,z triplets. Graphic output can be in DXF vector format, or raster image.
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ELINT Alchemist
Plot, analyse and measure ELINT Time-Based data.
This program will open an ELINT Time-Based Data (TBD) file and plot it for purposes of measurement and analysis. Test files included. New ver 0.4 added 2018-01-01. -
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ctioga2
polymorphic plotting program
ctioga2 is a plotting program in the spirit of gnuplot. It can be used either directly on command-line or writing command files (or a mix of both). It produces publication-quality PDF files. It is based on the Tioga plotting library. -
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Excel to Graphviz
Create graphviz diagrams with excel
Free, easy to use, excel tool to create data and process flow diagrams with table data In separate excel sheets you define items(nodes), lines(edges) and grouping(clusters) Separate definition of node, edge and cluster styles Graph settings sheet Output control sheet Examples and readme are included in the zip file Get it working: -Install graphviz (http://graphviz.org/Download.php) -Download Excel to Graphviz -Open one of the ExcelToGraphviz workbooks -Go to sheet settings and update "dotpath" to where graphviz' dot.exe was installed (e.g. C:\Program Files (x86)\Graphviz2.38\bin\dot.exe) -Generate the flow diagram with cntrl-M -Import from older version with cntrl-I This tool was initially made to show the usefulness of a service registry or service catalog in an enterprise integration environment. Therefore most examples are (anonymized) output of its use with ESB's at various telecom, banking and logistics companies Review/Feedback appreciated -
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ThanDxflib is a library, written in Fortran 77, which makes the creation of .dxf drawings easy. The dxf files may be read by any CAD program.
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Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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Crygr
Compare and visualize charge densities from various file formats.
...Wave functions in the form of .wfn files are also supported and serve, not only to compute the charge densities, but also laplacian as the sum of second partial derivatives of charge density. Thanks to the cooperation with the author of Jana2006 Vaclav Petricek, the program supports also multipoles obtained by measurements on a diffractometer. With all those file formats available to it, it can compare and visualize the differences between various sources describing the same chemical structure. -
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New Terrain and 3D Map System
a very lightweight advanced terrain-rendering and 3D map rendering sys
A very lightweight advanced terrain-rendering and 3D map rendering system. Minimal dependencies: OpenGL, SDL. It's distrib in 2-3 separate modules: 1. the C++ implementation of the terrain- and/or surface- rendering Algorithms I have developed: both a multithread and a non-multithread variant is relaeased. 2. Seme as at point 1. , but with a road-network rendering and collision-detection module I wrote before. It also adds some trees at the top of the terrain. (multitread vesion not... -
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FlightCraft3D: The Return
extreme 3D flight simulator with advanced terrain rendering
...This is not a typical flight simulator, but a simulator which explicitly tries to offer a complementary experience: don't care about navigation, too realistic control and usage of the instrument-panel... but just fly a plane in a wild, open environment. NOTE: the name of the zip files corresponding to the 2 variants of the program, is "map_system_v2_wvehicles" and not "flightcraft_the_return". -
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...ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW. ADOMA is a commandline program that can easily be used in pipelines. For more information check the README.md in the Files section. How to cite ADOMA: Zaal, D. and Nota, B. (2016), ADOMA: A Command Line Tool to Modify ClustalW Multiple Alignment Output. Mol. Inf., 35: 42–44. doi: 10.1002/minf.201500083 http://onlinelibrary.wiley.com/doi/10.1002/minf.201500083/abstract
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PhaseIt
Graphical PDF Library
PhaseIt is a PDF database program for your literature projects. It allows to import PDFs using simple drag-and-drop and offers fast, graphical categorization of your files, as well as easy access via your favorite installed PDF reader. -
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HomSI
Homozygous Stretch Identifier from next-generation sequencing data
...Recently, the advent of next generation sequencing enables the concurrent identification of homozygous regions and the detection of mutations relevant for diagnosis, using data from a single sequencing experiment. In this respect, we have developed a novel tool that identifies homozygous regions using deep sequence data. Using *.vcf files as an input file, our program identifies the majo -
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Animp is an OpenGL program to display movies of particles in motion where the movies are produced by adding calls to animp library routines to simulation code written in either C++ or Fortran. Animp can also display molecules read from PDB files.
