Showing 106 open source projects for "algorithm"

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  • 1

    Tree Visualisation with Visual Cues

    Tree Visualisation with Visual Cues

    This project extends a previous work on node link tree visualisation and interaction by providing visual clues on hidden structures. We adopt DOITree from Prefuse package (https://github.com/prefuse/Prefuse), a multi-focal tree layout algorithm, for exploring large hierarchical structures. Related publications: https://www.sciencedirect.com/science/article/pii/S1045926X1630009X https://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=6902871
    Downloads: 5 This Week
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  • 2
    LEACrypt

    LEACrypt

    TTAK.KO-12.0223 Lightweight Encryption Algorithm Tool

    The Lightweight Encryption Algorithm (also known as LEA) is a 128-bit block cipher developed by South Korea in 2013 to provide confidentiality in high-speed environments such as big data and cloud computing, as well as lightweight environments such as IoT devices and mobile devices. LEA is one of the cryptographic algorithms approved by the Korean Cryptographic Module Validation Program (KCMVP) and is the national standard of Republic of Korea (KS X 3246). LEA is included in the ISO/IEC...
    Downloads: 2 This Week
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  • 3
    TSNE-CUDA

    TSNE-CUDA

    GPU Accelerated t-SNE for CUDA with Python bindings

    This repo is an optimized CUDA version of FIt-SNE algorithm with associated python modules. We find that our implementation of t-SNE can be up to 1200x faster than Sklearn, or up to 50x faster than Multicore-TSNE when used with the right GPU. You can install binaries with anaconda for CUDA version 10.1 and 10.2 using conda install tsnecuda -c conda-forge. Tsnecuda supports CUDA versions 9.0 and later through source installation, check out the wiki for up to date installation instructions. Time...
    Downloads: 1 This Week
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  • 4
    OptimalTransport.jl

    OptimalTransport.jl

    Optimal transport algorithms for Julia

    This package provides some Julia implementations of algorithms for computational optimal transport, including the Earth-Mover's (Wasserstein) distance, Sinkhorn algorithm for entropically regularized optimal transport as well as some variants or extensions. Notably, OptimalTransport.jl provides GPU acceleration through CUDA.jl and NNlibCUDA.jl.
    Downloads: 1 This Week
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  • 5
    Learn Julia the Hard Way

    Learn Julia the Hard Way

    Learn Julia the hard way

    ... be hard-pressed to find tasks it's completely unsuitable for (although that does not mean it's the best or easiest choice for any of them). Julia was developed with the occasional reference to R, and with an avowed intent to improve upon R's clunkiness. R is a great language, but relatively slow, to the point that most people use it to rapidly prototype, and then implement the algorithm for production in Python or Java. Julia seeks to be as approachable as R but without the speed penalty.
    Downloads: 1 This Week
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  • 6
    DISTOD

    DISTOD

    Distributed discovery of bidirectional order dependencies

    The DISTOD data profiling algorithm is a distributed algorithm to discover bidirectional order dependencies (in set-based form) from relational data. DISTOD is based on the single-threaded FASTOD-BID algorithm [1], but DISTOD scales elastically to many machines outperforming FASTOD-BID by up to orders of magnitude. Bidirectional order dependencies (bODs) capture order relationships between lists of attributes in a relational table. They can express that, for example, sorting books...
    Downloads: 1 This Week
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  • 7
    CNN Explainer

    CNN Explainer

    Learning Convolutional Neural Networks with Interactive Visualization

    In machine learning, a classifier assigns a class label to a data point. For example, an image classifier produces a class label (e.g, bird, plane) for what objects exist within an image. A convolutional neural network, or CNN for short, is a type of classifier, which excels at solving this problem! A CNN is a neural network: an algorithm used to recognize patterns in data. Neural Networks in general are composed of a collection of neurons that are organized in layers, each with their own...
    Downloads: 1 This Week
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  • 8
    Forecasting Best Practices

    Forecasting Best Practices

    Time Series Forecasting Best Practices & Examples

    Time series forecasting is one of the most important topics in data science. Almost every business needs to predict the future in order to make better decisions and allocate resources more effectively. This repository provides examples and best practice guidelines for building forecasting solutions. The goal of this repository is to build a comprehensive set of tools and examples that leverage recent advances in forecasting algorithms to build solutions and operationalize them. Rather than...
    Downloads: 0 This Week
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  • 9
    Cubature.jl

    Cubature.jl

    One- and multi-dimensional adaptive integration routines for Julia

    This module provides one- and multi-dimensional adaptive integration routines for the Julia language, including support for vector-valued integrands and facilitation of parallel evaluation of integrands, based on the Cubature Package by Steven G. Johnson. Adaptive integration works by evaluating the integrand at more and more points until the integrand converges to a specified tolerance (with the error estimated by comparing integral estimates with different numbers of points). The Cubature...
    Downloads: 1 This Week
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  • 10
    Harmony Data Integration

    Harmony Data Integration

    Fast, sensitive and accurate integration of single-cell data

    Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. Harmony has been tested on R versions =4. Please consult the DESCRIPTION file for more details on required R packages. Harmony has been tested on Linux, OS X, and Windows platforms.
    Downloads: 1 This Week
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  • 11
    Pigale
    Pigale is a graph editor and a C++ algorithm library essentially concerned with planar graphs. This software, particularly intended for graph theoretical research, includes new algorithms based on our recent theoretical researches.
    Downloads: 1 This Week
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  • 12
    JBotSim is a multipurpose dynamic network simulator that allows to quickly prototype a distributed algorithm and test its behavior on a set of static or mobile nodes. If mobile, the nodes can be controlled by the mouse or by program.
    Downloads: 6 This Week
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  • 13
    AI learning

    AI learning

    AiLearning, data analysis plus machine learning practice

    We actively respond to the Research Open Source Initiative (DOCX) . Open source today is not just open source, but datasets, models, tutorials, and experimental records. We are also exploring other categories of open source solutions and protocols. I hope you will understand this initiative, combine this initiative with your own interests, and do what you can. Everyone's tiny contributions, together, are the entire open source ecosystem. We are iBooker, a large open-source community,...
    Downloads: 1 This Week
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  • 14
    JPIV

    JPIV

    Particle Image Velocimetry

    JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities. JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/
    Downloads: 0 This Week
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  • 15
    vizceral

    vizceral

    WebGL visualization for displaying animated traffic graphs

    vizceral is a component for displaying traffic data on a webgl canvas. If a graph of nodes and edges with data about traffic volume is provided, it will render a traffic graph animating the connection volume between nodes. This component can take multiple traffic graphs and will generate a 'global' graph showing all incoming traffic into each of the 'regions', with support for cross-region traffic. There are three levels of information, global, regional, and service-level, with clicking or...
    Downloads: 1 This Week
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  • 16
    ipytracer

    ipytracer

    Algorithm Visualizer for IPython/Jupyter Notebook

    Algorithm Visualizer for IPython/Jupyter Notebook. If you use the display(TracerObject) code from where you want to see, you can use it without any special modification.
    Downloads: 0 This Week
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  • 17
    EntOpt Layout

    EntOpt Layout

    Relative entropy optimization network layout plugin

    The goal of this project is to implement a graph layout / network visualization algorithm as a Java plugin for Cytoscape (http://cytoscape.org/), using a recently published relative entropy optimization based method, called Unified Data Representation (Kovács IA et al. Sci Rep. 2015). If you are using the plugin, please cite: Ágg B, Császár A, Szalay-Bekő M, Veres DV, Mizsei R, Ferdinandy P, Csermely P and Kovács IA (2019) The EntOptLayout Cytoscape plug-in for the efficient visualization...
    Downloads: 0 This Week
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  • 18
    Illustrated Algorithms

    Illustrated Algorithms

    Interactive algorithm visualizations

    Inspired by Grokking Algorithms and python-execution-trace, this project aims to reveal the mechanics behind algorithms via interactive visualizations of their execution. Visual representations of variables and operations augment the control flow, alongside actual source code. You can fast forward and rewind the execution to closely observe how an algorithm works. The same code that is displayed next to the illustration is also decorated using babel-plugin-trace-execution and executed to record...
    Downloads: 0 This Week
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  • 19
    A spring-based 3D graph layout tool written in Java. Rendering is performed in OpenGL via the JOGL library.
    Downloads: 1 This Week
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  • 20
    TESTIMAGES

    TESTIMAGES

    Testing images for scientific purposes

    ... patterns). Please cite the following papers when using any image in this archive: * ASUNI N, GIACHETTI A, "TESTIMAGES: A Large Data Archive For Display and Algorithm Testing", Journal of Graphics Tools, Volume 17, Issue 4, 2015, pages 113-125, DOI:10.1080/2165347X.2015.1024298 * ASUNI N, GIACHETTI A, "TESTIMAGES: a large-scale archive for testing visual devices and basic image processing algorithms", STAG - Smart Tools & Apps for Graphics Conference, 2014.
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    Downloads: 85 This Week
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  • 21

    Random Bits Forest

    RBF: a Strong Classifier/Regressor for Big Data

    We present a classification and regression algorithm called Random Bits Forest (RBF). RBF integrates neural network (for depth), boosting (for wideness) and random forest (for accuracy). It first generates and selects ~10,000 small three-layer threshold random neural networks as basis by gradient boosting scheme. These binary basis are then feed into a modified random forest algorithm to obtain predictions. In conclusion, RBF is a novel framework that performs strongly especially on data...
    Downloads: 0 This Week
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  • 22
    SmartRoot

    SmartRoot

    Semi-automated root image analysis software

    SmartRoot is a semi-automated image analysis software which streamlines the quantification of root growth and architecture for complex root systems. The software combines a vectorial representation of root objects with a powerful tracing algorithm which accommodates to a wide range of image source and quality. The software supports a sampling-based analysis of root system images, in which detailed information is collected on a limited number of roots selected by the user according...
    Downloads: 1 This Week
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  • 23

    MS-ML Studio

    Free and Open-Source Tool for Mass Feature Extraction

    Mass spectrometer is a useful tool for biochemistry research field analysis. It is used to identify microorganisms, protein, chemical compounds and complex diseases by blood analysis. There is many tools and libraries to handle different steps of mass spectrometry (MS) data analysis. However, the integration of all these tools lacks user friendly approaches. We developed a machine learning solution capable to handle all steps of MS data analysis. The ML-MS Tool is an free software that...
    Downloads: 0 This Week
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  • 24
    Visualization of Protein-Ligand Graphs

    Visualization of Protein-Ligand Graphs

    Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools

    NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/
    Downloads: 1 This Week
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  • 25
    ChEnMTD

    ChEnMTD

    Calculate the number of theoretical trays with McCabe-Thiele method

    Use the McCabe-Thiele method to calculate the number of theoretical trays in a distillation column operated under the conditions specified. It has tools for data analysis to obtain empirical or semi-empirical equilibrium models. You can even use cubic splines. This project uses icons of "Open Icon Library" https://sourceforge.net/projects/openiconlibrary/
    Downloads: 0 This Week
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