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Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
...The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm.
VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/
...Some features:
- built in multiplayer
- incorporating data from different sensors (IMU, AHRS, Razer Hydra)
- image server/client
- built in support for motion capture data analysis
- path finding using data from physics engine (backwave propagation algorithm)
- built in XML parser
- graphical world editor
- plugins system (C++)
...It has a range of elements, contact handling and different material laws. Models can be created, solved and analyzed with the included pre- and postprocessor. Impact is based on an Explicit Time stepping algorithm. These kind of codes are used to simulate dynamic phenomena such as car crashes and similar, usually involving large deformations.