Open Source Linux Data Integration Tools - Page 4

ZENBU is a data integration, data processing, and visualization web system based around three main web interfaces : an expression data enhanced genome browser interface, a secured user system for data upload and secured data sharing, and a data explorer interface to find and manipulate data across the many supported experimental data types and to find shared user configurations ZENBU is built as a web2.0 client/server application with javascript web clients and c++ server infrastructure.

The Bio2RDF project aims to transforms silos of life science data into a globally distributed network of linked data for biological knowledge discovery. Bio2RDF creates and provides machine understandable descriptions of biological entities using the RDF/RDFS/OWL Semantic Web languages. Using both syntactic and semantic data integration techniques, Bio2RDF seamlessly integrates diverse biological data and enables powerful new SPARQL-based services across its globally distributed knowledge bases.

Pentaho Data Integration plugin to supply a function to resolve, and insert if it doesn't exist, the date dimension. It calculates all calendar data and you must supply the table info used to save the information.

This plugin supply a method to join two tables using the date-from and date-to history. It use the two dates that indicate the life of the record and join using a query (like the database join plugin) to resolve the record's story of the two entities.

A tool for autonomous and virtual topical data integration using the focused web-harvesting method.

We introduce optPBN, a Matlab-based toolbox for the optimization of probabilistic Boolean networks (PBN) which operates under the framework of the BN/PBN toolbox from Shmulevich et al. optPBN offers an easy generation of probabilistic Boolean networks from Boolean rule-based modeling and allows for flexible measurement data integration from multiple experiments and a subsequent integrated optimization problem generation which then can be solved with different optimizers. Thereby optPBN allows for the identification of Boolean functions in the model from a given set of candidate Boolean rules which can be applied for network inference study. In addition, it also permits the determination of selection probabilities of Boolean rules in PBNs which can be further used to determine the influence of parent nodes in biochemical interactions.

Ontology Representation and Data Integration (ORDI) is middleware framework to allow enterprise data integration via RDF-like data model.

Using this PDI plugin you can connect any JIRA service even using SSL connection and perform JSON data extraction over the results. JQL is used to obtain data from the JIRA remote service.

reticulate is an R package from Posit that creates seamless interoperability between R and Python. It lets you call Python modules, classes, and functions from within R, automatically translating between R and Python data structures. Useful for combining Python tooling with R projects, data analysis, and RMarkdown reports.

Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations.

The objective of this project is to enable seamless integration between webMethods and the jasper intelligence suite. It will allow pixel perfect reporting solutions with complex data integration requirements to be developed in minutes.

A Graph-Based Fact Management Architecture for Data Integration

Apatar is an open source Extract, Transform, and Load (ETL) project. Modular architecture delivers 1. Visual job designer/mapping 2. Connectivity to all major data sources 3. Flexible Deployment Options (GUI, or server engine with JVM, or embedded).