Open Source Linux Data Integration Tools - Page 2
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Dagster
An orchestration platform for the development, production
Dagster is an orchestration platform for the development, production, and observation of data assets. Dagster as a productivity platform: With Dagster, you can focus on running tasks, or you can identify the key assets you need to create using a declarative approach. Embrace CI/CD best practices from the get-go: build reusable components, spot data quality issues, and flag bugs early. Dagster as a robust orchestration engine: Put your pipelines into production with a robust multi-tenant, multi-tool engine that scales technically and organizationally. Dagster as a unified control plane: The ‘single plane of glass’ data teams love to use. Rein in the chaos and maintain control over your data as the complexity scales. Centralize your metadata in one tool with built-in observability, diagnostics, cataloging, and lineage. Spot any issues and identify performance improvement opportunities. -
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DataSync Suite is an open source platform for integrating tools like Zimbra, SugarCRM, and Drupal. The tool is focused on a single sign-on, application data integration, and fast, flexible deployment.
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EasyDataQuality for Pentaho Kettle
EasyDataQuality for Pentaho Data Integration in Kettle
EasyDQ plugins for Contact cleansing in Pentaho Data Integration in Kettle. -
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The Fluxion framework is a prototype data integration system using Semantic Web technologies.
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Save hundreds of developer hours with components built for SaaS applications.Whether you want full self-service analytics or simpler multi-tenant security, Qrvey’s embeddable components and scalable data management remove the guess work.
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Open source Application and Data Integration Platform that allows developers and end-users to integrate and transform information using a web-based drag-and-drop interface that doesn't require coding or programming skills.
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Grinn
graph database and R package for omic data integration
http://kwanjeeraw.github.io/grinn/ -
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The Hanalyzer is a tool designed to help biologists explain results observed in genome-scale experiments and to generate new hypotheses. It combines information extraction, semantic data integration, reasoning, and visualization.
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Harmony Data Integration
Fast, sensitive and accurate integration of single-cell data
Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. Harmony has been tested on R versions =4. Please consult the DESCRIPTION file for more details on required R packages. Harmony has been tested on Linux, OS X, and Windows platforms. -
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Hetionet
Hetionet: an integrative network of disease
Hetionet is a hetnet — network with multiple node and edge (relationship) types — which encodes biology. The hetnet was designed for Project Rephetio, which aims to systematically identify why drugs work and predict new therapies for drugs. The JSON and Neo4j formats contain node and edge properties, which are absent in the TSV and matrix formats, including licensing information. Therefore the recommended formats are JSON and Neo4j. Our hetio package in Python reads the JSON format, but it is otherwise a simple yet new format. The Neo4j graph database has an established and thriving ecosystem. However, if you would like to access Hetionet without Neo4j, then we suggest the JSON format. The matrix format refers to HetMat archives, which store edge adjacency matrices on disk. Additional usage information is available at the corresponding download locations. -
Red Hat Enterprise Linux on Microsoft AzureRed Hat Enterprise Linux (RHEL) on Microsoft Azure provides a secure, reliable, and flexible foundation for your cloud infrastructure. Red Hat Enterprise Linux on Microsoft Azure is ideal for enterprises seeking to enhance their cloud environment with seamless integration, consistent performance, and comprehensive support.
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INDUS is a porject for knowledge acquisition and data integration from heterogeneous distributed data, particularly from bio-informatics databases
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This disease-centric project contributes data integration and analysis tools from the Institute for Systems Biology (ISB). We offer this project to the research community to further our efforts in disease prediction and prevention.
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An extension package to Pentaho Data Integration, providing plug-ins. Steps/job entries can be downloaded independently and each comes with source code in the .zip file. All are licensed as LGPL or GPL.
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The JasperSoft Business Intelligence Suite provides integrated reporting, analysis, and data integration to make faster, better decisions. * Integrated or stand-alone * Analytic & operational data integration * Embeddable with ERP or CRM
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Jitsu
Jitsu is an open-source Segment alternative
Jitsu is a fully-scriptable data ingestion engine for modern data teams. Set-up a real-time data pipeline in minutes, not days. Installing Jitsu is a matter of selecting your framework and adding few lines of code to your app. Jitsu is built to be framework agnostic, so regardless of your stack, we have a solution that'll work for your team. Connect data warehouse (Snowflake, Clickhouse, BigQuery, S3, Redshift ot Postgres) and query your data instantly. Jitsu can either stream data in real-time or send it in micro-batches (up to once a minute). Apply any transformation with Jitsu. Just write JavaScript code right in the UI to do anything with incoming data. And yes, the code editor supports code completion, debugging and many more. It feels like a full-featured IDE! -
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KETL(tm) is a production ready ETL platform. The engine is built upon an open, multi-threaded, XML-based architecture. KETL's is designed to assist in the development and deployment of data integration efforts which require ETL and scheduling
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LD-FusionTool
Data Fusion and Conflict Resolution tool for Linked Data
LD-FusionTool covers the Data Fusion step in the integration process for RDF, where data are merged to produce consistent and clean representations of objects, and conflicts which emerged during data integration need to be resolved. -
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Developing a "bridge" to facilitate transfer of data between various databases(ith dis-similar schemas). JDBC and XML would be used.
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Mara Pipelines
A lightweight opinionated ETL framework, halfway between plain scripts
This package contains a lightweight data transformation framework with a focus on transparency and complexity reduction. Data integration pipelines as code: pipelines, tasks and commands are created using declarative Python code. PostgreSQL as a data processing engine. Extensive web ui. The web browser as the main tool for inspecting, running and debugging pipelines. GNU make semantics. Nodes depend on the completion of upstream nodes. No data dependencies or data flows. No in-app data processing: command line tools as the main tool for interacting with databases and data. Single machine pipeline execution based on Python's multiprocessing. No need for distributed task queues. Easy debugging and output logging. Cost based priority queues: nodes with higher cost (based on recorded run times) are run first. -
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N-Browse is a client-server package for interactive visualization of network data with heterogeneous types of links, intended for ease of use and designed using a generic database schema for data integration and visualization.
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Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.
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OPENSUITE - an integration platform to enable process data integration between independently developed business applications.OPENSUITE integration platform takes advantage of the SOA best integration practices to supply the middleware layer functionality
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Ondex Web
Web-based visualisation of networks using Java
Ondex Web is a new web-based implementation of the network visualization and exploration tools from the Ondex data integration platform. New features such as context-sensitive menus and annotation tools provide users with intuitive ways to explore and manipulate the appearance of heterogeneous biological networks. Ondex Web is open source, written in Java and can be easily embedded into Web sites as an applet. Ondex Web supports loading data from a variety of network formats, such as XGMML, NWB, Pajek and OXL -
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Open Information Integration Tool Suite (Open II) is used by analysts and programmers to accelerate data integration and harmonization across organizations. OpenII has a neutral schema repository for browsing and comparing all sorts of data models. OpenII is built as a Rich Client Platform Application on top of Eclipse 3.x. Developers need to download Eclipse, install the RCP support, the Fatjar plugin and the Delta Pack in one of the 3.x flavors. Release Notes Release Date: Jan 2014 Build Version: 1.0.2666 Notes: 1. Now support for AVRO and HCatalog imports 2. Better support for OWL 3. New OWL and Containing Relationship viewers 4. Added case insensitive option in exact matcher for Harmony
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PANDORA
Revolutionizing Biomedical Research with Advanced Machine Learning
PANDORA is a machine learning (ML) tool that can be used to integrate various data types, including clinical, transcriptome and microbiome data and find connections in large datasets. PANDORA can be easily installed using Docker, a pre-built version of the software can be pulled from DockerHub. In order to run a test instance of PANDORA, users will first need to prepare their local environment by downloading, installing, and configuring Docker. genular is a community behind SIMON an open-source Machine Learning KnowledgeDiscovery software, built by a vibrant community of people just like you! Join us and make SIMON even cooler! Exploratory analysis of machine learning results with the help of many different visualization techniques will give you instant insights into models and data.