Search Results for "r-map"
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Showing 40 open source projects for "r-map"
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Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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clusterProfiler
A universal enrichment tool for interpreting omics data
clusterProfiler is an R/Bioconductor package that provides a unified workflow for functional enrichment analysis to interpret high-throughput omics results. It supports both over-representation analysis and gene set enrichment analysis, letting you work with unranked gene lists or ranked statistics from differential pipelines. The package connects to multiple knowledge bases—such as Gene Ontology, KEGG, Reactome, Disease Ontology, MeSH and others—through a consistent interface so you can query different biological lenses without rewriting code. ... -
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SageMaker Spark Container
Docker image used to run data processing workloads
Apache Spark™ is a unified analytics engine for large-scale data processing. It provides high-level APIs in Scala, Java, Python, and R, and an optimized engine that supports general computation graphs for data analysis. It also supports a rich set of higher-level tools including Spark SQL for SQL and DataFrames, MLlib for machine learning, GraphX for graph processing, and Structured Streaming for stream processing. The SageMaker Spark Container is a Docker image used to run batch data processing workloads on Amazon SageMaker using the Apache Spark framework. ... -
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awesome-single-cell
Community-curated list of software packages and data resources
...Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to address the statistical challenges of single cell RNA-seq. The package incorporates novel and established methods to provide a flexible framework to perform filtering, quality control, normalization, dimension reduction, clustering, differential expression and a wide-range of plotting. ... -
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Dash
Build beautiful web-based analytic apps, no JavaScript required
...It ties modern UI controls and displays such as dropdown menus, sliders and graphs directly to your analytical Python code, and creates exceptional, interactive analytics apps. Dash apps are very lightweight, requiring only a limited number of lines of Python or R code; and every aesthetic element can be customized and rendered in the web. It’s also not just for dashboards. You have full control over the look and feel of your apps, so you can style them to look any way you want. -
Go from Code to Production URL in SecondsSkip the Kubernetes configs. Cloud Run handles HTTPS, scaling, and infrastructure automatically. Two million requests free per month.
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flamebearer
A JavaScript CPU trace analysis tool for agents and humans
Flamebearer is a JavaScript command-line CPU trace analyzer designed for both developers and coding agents. It reads Chrome DevTools Performance recordings and Node.js .cpuprofile files. Instead of producing a visual flame graph, the current version summarizes traces as compact structured text. Reports highlight major CPU offenders, hot source lines, long tasks, and other areas worth investigating. Source maps can automatically translate minified frames back to original source locations when... -
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R packages (maintained by YJLEE)
R packages for PK/PD modeling , BE/BA, drug stability, ivivc, etc.
These R packages are developed for data analysis of PK/PD modeling & simulation, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM). -
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JARI (Just Another R Interface) is a comprehensive data science desktop suite engineered to guide researchers, students, and analysts through the entire data analysis lifecycle. By pairing a structured workflow with automated R code generation, JARI allows users to conduct rigorous statistical analysis without struggling with syntax—while keeping the full power of custom R scripting accessible for advanced users
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Hyperspectral data analysis in R
Handling and basic analysis of hyperspectral data in R
The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal. -
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LabPlot
Data Visualization and Analysis
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. -
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mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
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NumeRe
Framework for numerical computations, data analysis and visualisation
Curve fitting | Data analysis | Plotting | Matrix operations | FFT | Extensible framework | Multiple file formats | Programmable | Open source | Free for everyone NumeRe: Framework for Numerical Computation is a numerical framework written for Microsoft Windows(R) and released under the GNU GPL v3 for solving and visualizing mathematical and physical problems numerically. Keep simple things simple: You want to plot a sine function? Just enter 'plot sin(x)'. You want to load some data? Enter 'load "path/to/your/file"' or drag the file into the terminal. You need to fit a function to the data? ... -
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DocWire SDK
Award-winning modern data processing SDK in C++20
DocWire SDK, a standout C++20AI driven data processing tool, has received award from SourceForge and strong backing from Microsoft. It handles nearly 100 file types, empowering efficient text extraction, web data extraction, and document analysis. For businesses, the shift to DocWire SDK signifies a leap forward. It promises comprehensive document format support and the ability to extract valuable insights from email boxes, databases, and websites using cutting-edge AI. DocWire SDK aims to... -
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PANDA
A comprehensive and flexible quantification tool for proteomics data
PANDA is a comprehensive and flexib tool for quantitative proteomics data analysis, which is developed based on our solid foundations in quantitative proteomics for years. Several novelties have been implemented in it. First, we implement the advantage algorithms of LFQuant (Proteomics 2012, 12, (23-24), 3475-84) and SILVER (Bioinformatics 2014, 30, (4), 586-7) into PANDA. Second, we consider the state-of-art concept of quantification reliability in this quantitative workflow. On the levels... -
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Reproducible-research
A Reproducible Data Analysis Workflow with R Markdown, Git, Make, etc.
In this tutorial, we describe a workflow to ensure long-term reproducibility of R-based data analyses. The workflow leverages established tools and practices from software engineering. It combines the benefits of various open-source software tools including R Markdown, Git, Make, and Docker, whose interplay ensures seamless integration of version management, dynamic report generation conforming to various journal styles, and full cross-platform and long-term computational reproducibility. ... -
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The application helps you with your statistics assignment help. Our Stata assignment help is popular among students following course economics and political science. We offer R assignment help for data analysis as well as graphical user interface although SPSS looks a lot like excel but mostly students avail our excel assignment help for small datasets and SPSS assignment help for larger datasets. For assistance you can email us at info@statisticshomeworkhelper.com .
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Mass-Up
MALDI-TOF data analysis tool
Mass-Up is an Open-Source mass spectrometry utility for proteomics designed to support the preprocessing and analysis of MALDI-TOF mass spectrometry data. Mass-Up includes several tools and operations to load, preprocess and analyze MALDI-TOF data. -
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Feather
Binary data frame storage for Python, R, and more
...It provides columnar serialization for data frames, making read and write operations faster than many text-based formats. The project was built to make sharing data across languages such as Python and R easier. Feather is powered by the Apache Arrow columnar memory specification, which helps it represent numeric, string, categorical, date, timestamp, boolean, and binary data efficiently. It also supports null and missing values across column types. Current development continues through Apache Arrow, with modern Python usage handled through pyarrow.feather. -
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An introduction to Data Analysis in R
A guide for learning the basic tools on data anaylisis with R
An Introduction to Data Analysis in R [Book] A guide for learning the basic tools on data anaylisis: process, visualize and learn from your data using R programming. This repository holds the necessary data sets for the book "An introduction to Data Analysis in R", to be published by Springer series Use R!. The book can be purchased in XXX. The book is meant as an introductory guide to manipulate data sets in the Big Data paradigm. -
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TaBS-Pipe
Targeted Bisulfite Sequencing Data Analysis Pipeline v1.0.2
A pipeline to analyze the data obtained from targeted bisulfite sequencing through the ion-torrent platform. TaBSAP is a pipeline to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step and enables a researcher to analyze the methylation levels of their samples straight away. It's main features are: -Bisulfite mapping and methylation calling in one single step -Supports single-end read alignments -Alignment seed length, number of mismatches etc. are adjustable -The output gives heatmap with categories. -
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PivotTable.js
Open-source Javascript Pivot Table
...Built atop jQuery and jQueryUI, it allows users to drag and drop fields into rows, columns, and aggregators to slice and summarize datasets. It also integrates with Python and R via modules like pivottablejs, making it versatile for data analysis across platforms. -
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i-Map - Plot Geolocation from Images
Automatically plots latitude, longitude from images on Google maps.
i-Map is a Photo metadata forensic tool for Geo-location analysis of images that are clicked from GPS enabled devices. In this tool, you can load 100s of images from a suspect's device and analyze them to know various locations where photos were clicked on mobile phone/tablet. After loading images, with a single click, iMap plots all the images on World Map to visually check where they have been captured, generate timeline and activity of suspect and match them with CDR (Call Detail Record) Details. ... -
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DSTK - DataScience ToolKit
DSTK - DataScience ToolKit for All of Us
...Of course you may specify JASP for advanced data editing and RapidMiner for advanced prediction modeling. DSTK is written in C#, Java and Python to interface with R, NLTK, and Weka. It can be expanded with plugins using R Scripts. We have also created plugins for more statistical functions, and Big Data Analytics with Microsoft Azure HDInsights (Spark Server) with Livy. License: R, RStudio, NLTK, SciPy, SKLearn, MatPlotLib, Weka, ... each has their own licenses. -
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The purpose of stellaR is to provide a tool to read a dynamic simulation model, developed in STELLA, and then translate it into a script that can be executed in R (a powerful data analysis and visualizaion environment - http://www.r-project.org/).
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CorNetMap
A tool for Gene Expression Correlation Network
...Capable of both two-dimensional and multidimensional data analysis. 3. Calculate Pearson correlation and cross-correlation for analysis data with phase difference. 4. Generate correlation Heat-map and draws network map. 5. Save correlation data as text file. How to use and doccumentation: https://sourceforge.net/projects/cornetmap/files/Documentation_corNetMap.pdf Sample data for testing: https://sourceforge.net/projects/cornetmap/files/Test%20Data/ Citation: Cite CornetMap as " Khaund, A. Bose, B. CorNetMap. https://sourceforge.net/projects/cornetmap " Credit: Abhigyan Khaund, Biplab Bose, IIT Guwahati -
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IAP.G2P
IAP - the Integrated Analysis Pipeline
The Integrated Analysis Platform (IAP) has been designed and developed to support the analysis of large-scale image data sets of different camera systems. It aims in bridging different data domains and in integrating different approaches to data analysis and post-processing.
