Showing 14 open source projects for "mapping"

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  • 1

    Hyperspectral data analysis in R

    Handling and basic analysis of hyperspectral data in R

    The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal.
    Downloads: 3 This Week
    Last Update:
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  • 2
    relax

    relax

    Molecular dynamics by NMR data analysis

    ...Organic molecules, proteins, RNA, DNA, sugars, and other biomolecules are all supported. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE, reduced spectral density mapping, the Lipari and Szabo model-free analysis, study of domain motions via the N-state model and frame order dynamics theories using anisotropic NMR parameters such as RDCs and PCSs, the investigation of stereochemistry in dynamic ensembles, and the analysis of relaxation dispersion data.
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    Downloads: 6 This Week
    Last Update:
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  • 3
    mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
    Downloads: 0 This Week
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  • 4
    GXSM

    GXSM

    Scanning Probe Microscopy Controller and Data Visualization Software

    GXSM -- Gnome X Scanning Microscopy: A multi-channel image and vector-probe data acquisition and visualization system designed for SPM techniques (STM,AFM..), but also SPA-LEED/LEED/LEEM data analysis. A plug-in interface allows any user add-on data-processing and special hardware and instrument support. Latest: NC-AFM and related explorative methods as SQDM can be configured. High-Speed external PAC-PLL hardware option with digital DSP link. Based on several hardware options it supports...
    Downloads: 4 This Week
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    Web-Based Debt Collection Software

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  • 5
    SandDance

    SandDance

    Visually explore, understand, and present your data

    By using easy-to-understand views, SandDance helps you find insights about your data, which in turn help you tell stories supported by data, build cases based on evidence, test hypotheses, dig deeper into surface explanations, support decisions for purchases, or relate data into a wider, real world context. SandDance uses unit visualizations, which apply a one-to-one mapping between rows in your database and marks on the screen. Smooth animated transitions between views help you to maintain context as you interact with your data. This new version of SandDance has been rebuilt from scratch with the goal of being modular, extensible, and embeddable into your custom applications. We are open and driven by the community through contributions, feature requests, and discussion. ...
    Downloads: 0 This Week
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  • 6

    QuiclickRNAseq

    An integrated pipeline for RNA-seq analysis

    Quiclick is a python framework for RNA-seq data analysis, including data trimming, mapping, counting and RNA editing analysis.
    Downloads: 0 This Week
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  • 7
    LaueTools

    LaueTools

    open source python packages for X-ray MicroLaue Diffraction analysis

    LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools
    Downloads: 1 This Week
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  • 8

    TaBS-Pipe

    Targeted Bisulfite Sequencing Data Analysis Pipeline v1.0.2

    ...TaBSAP is a pipeline to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step and enables a researcher to analyze the methylation levels of their samples straight away. It's main features are: -Bisulfite mapping and methylation calling in one single step -Supports single-end read alignments -Alignment seed length, number of mismatches etc. are adjustable -The output gives heatmap with categories.
    Downloads: 0 This Week
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  • 9

    X-SOCS

    X-ray Strain Orientation Calculation Software

    The X-ray Strain Orientation Calculation Software (X-SOCS) is a user-friendly software, developed for automatic analysisof 5D sets of data recorded during continuous mapping measurements. X-SOCS aims at retrieving strain and tilt maps of nanostructures, films, surfaces or even embedded structures. For more information: http://scripts.iucr.org/cgi-bin/paper?S1600576714004506 To download the latest version of XSOCS (D. Naudet, T. Vincent, M.I. Richard, G. Chahine), follow the instruction in the following link: https://gitlab.esrf.fr/kmap/xsocs You can find on youtube video tutorials explaining the main steps to follow for a standard KMAP data analysis. ...
    Downloads: 0 This Week
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  • 10
    QuickRNASeq

    QuickRNASeq

    A pipeline for large scale RNA-seq data analysis

    We have implemented QuickRNASeq, an open-source based pipeline for large scale RNA-seq data analysis. QuickRNASeq takes advantage of parallel computing resources, a careful selection of previously published algorithms for RNA-seq read mapping, counting and quality control, and a three-stage strategy to build a fully automated workflow. We also implemented built-in functionalities to detect sample swapping or mislabeling in large-scale RNA-seq studies. Our pipeline significantly lifts large-scale RNA-seq data analysis to the next level of automation and visualization. ...
    Downloads: 0 This Week
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  • 11
    GRAIL Real Time Location Service (RTLS)
    Downloads: 0 This Week
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  • 12

    ANDS SISS (DC4B) Project

    GIS-Enabled Infrastructure for Spatially Integrated Social Science

    An on-line GIS-enabled infrastructure for spatially integrated social science. A web-based open source e-research facility for social-spatial data analysis that incorporates GIS-enabled visualisation (mapping and classification) and statistical modelling capabilities.
    Downloads: 11 This Week
    Last Update:
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  • 13
    This project is aimed at being able to log information from a NMEA gps in the back ground for later data analysis. It also has the ability to convert the raw log data into a Google Earth KML file for viewing.
    Downloads: 0 This Week
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  • 14
    EDAS2 is a web-based environmental quality data management and decision support framework
    Downloads: 0 This Week
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