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Showing 40 open source projects for "https"
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HEALPix
Data Analysis, Simulations and Visualization on the Sphere
Software for pixelization, hierarchical indexation, synthesis, analysis, and visualization of data on the sphere. Please acknowledge HEALPix by quoting the web page http://healpix.sourceforge.net (or https://healpix.sourceforge.io) and publication: K.M. Gorski et al., 2005, Ap.J., 622, p.759 Full software documentation available at https://healpix.sourceforge.io/documentation.php Wiki Pages: https://sourceforge.net/p/healpix/wiki/Home Exchanging Data with HEALPix (in FITS files): https://sourceforge.net/p/healpix/wiki/Exchanging%20Data%20with%20HEALPix/ GDL and FL users should read https://sourceforge.net/p/healpix/wiki/HEALPix%20and%20GDL/ -
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AtomProbeLab
Matlab-based analysis of Atom Probe Data
...Currently, this includes: standard file operations, plotting mass spectra, mass spectra analysis and mass peak overlap solving. For more information see the Wiki: https://sourceforge.net/p/atomprobelab/wiki/Home/ Quick overview video: https://youtu.be/8rJHce7M5UU More in-depth video using the APT school demos live script: https://www.youtube.com/watch?v=cyrLHCzZwuw For details of the maximum likelihood method used to solve peak overlaps see the following papers: https://doi.org/10.1017/S1431927616012782 and https://doi.org/10.1017/S1431927618016276 for the quantification of the uncertainty. ... -
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SafeUtils
110+ developer tools as native MacOS, Linux & Windows desktop apps.
Tools: https://safeutils.com/barcode-generator https://safeutils.com/color-picker https://safeutils.com/qr-code-generator https://safeutils.com/qr-code-scanner https://safeutils.com/word-counter https://safeutils.com/base-64-decoder https://safeutils.com/diff-checker https://safeutils.com/hex-to-ascii https://safeutils.com/json-formatter https://safeutils.com/lorem-ipsum-generator https://safeutils.com/random-generator https://safeutils.com/time-converter https://safeutils.com/xml-formatter https://safeutils.com/ascii-to-binary https://safeutils.com/ascii-to-hex https://safeutils.com/base-64-encoder https://safeutils.com/binary-to-ascii https://safeutils.com/case-converter https://safeutils.com/csv-to-json https://safeutils.com/decimal-to-ascii https://safeutils.com/html-formatter https://safeutils.com/html-preview https://safeutils.com/html-to-markdown https://safeutils.com/id-generator https://safeutils.com/json-to-csv https://safeutils.com/json-to-xml -
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NumeRe
Framework for numerical computations, data analysis and visualisation
...You need to fit a function to the data? Enter 'fit data() -with=YOURFUNCTION(x)' Need assistance? Enter 'help topic' into the terminal or simply press [F1]. Find us on Discord: https://discord.gg/s5tSjwU Follow us on Mastodon: https://fosstodon.org/@numeredevs Visit our page: https://www.numere.org Buy us a coffee: https://ko-fi.com/numere We've moved to GitHub: https://github.com/numere-org -
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PlateEditor
PlateEditor, a free web application to work with multi-well plates
...If yes, please cite us: https://doi.org/10.1371/journal.pone.0252488 -
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Eventer
Rapid, unbiased, reproducible analysis of synaptic events
...The software is coded in MATLAB, but has been compiled as standalone applications for Windows, Mac and Linux. Please visit the official Eventer website for more info https://eventerneuro.netlify.app/ While the paper is in preparation, please cite as; Winchester, G., Liu, S., Steele, O.G., Aziz, W. and Penn, A.C. (2020) Eventer. Software for the detection of spontaneous synaptic events measured by electrophysiology or imaging. http://doi.org/10.5281/zenodo.3991676 -
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xrayutilities
a package with useful scripts for X-ray diffraction physicists
...More detailed description as well as documentation can be found at webpage http://xrayutilities.sourceforge.io/. Downloads for windows can be found on http://pypi.python.org/pypi/xrayutilities Development is performed on github: https://github.com/dkriegner/xrayutilities -
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MTTK Open BI
A user-friendly lightweight BI tool.
A user-friendly lightweight BI tool. It is a set of plugins of MTTK Lowcode Engine, so the user manual and develop manual are combined together with MTTK Low Code Engine. Code repository: https://github.com/jamie-mttk/mttk-lowcode-designer Online demo available at http://139.129.210.30:8825 (First visit may be slow) Username: admin Password: 123456 Lightweight No data processing engine offered, all the data processing depends on the target Databse Server. Easy to use For example ,to build an echart need to provide many many configurtaions/options, such as title location, grid position,etc. ... -
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PDP-OmniSim
PDP-OmniSim simulating parallel and distributed processing systems
PDP-OmniSim 🧬 Scientific Overview PDP-OmniSim is an advanced computational framework for simulating parallel and distributed processing systems, with cutting-edge applications in computational neuroscience, distributed computing, and complex systems modeling. The framework provides researchers with robust tools for large-scale simulations of networked systems and their emergent behaviors. 🎯 Key Scientific Contributions 🔬 Interdisciplinary Research Domains Computational... -
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123VCF
An Intuitive and Efficient Tool for VCF file filtration
123VCF has been developed to make the filtration step of VCF files efficient and more importantly easy to understand. It can be used in the most important step of whole exome/genome sequencing data analysis in the research and also clinical settings. User manual: https://dl.adbioinformatics.net/123VCF/123VCF_Manual.ver2.pdf If you use 123VCF, please cite its paper: Eidi, M., Abdolalizadeh, S., Moeini, S. et al. 123VCF: an intuitive and efficient tool for filtering VCF files. BMC Bioinformatics 25, 68 (2024). https://doi.org/10.1186/s12859-024-05661-5 _____________________________________ Authors: Milad Eidi, Samaneh Abdolalizadeh, Soheila Moeini Supervisors: Javad Zahiri, PhD - Masoud Garshasbi, PhD Department of Neuroscience, University of California San Diego, California, USA Department of Medical Genetics, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran -
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CSI-Math-Notation-PostfixInfix
Perl Lib Math Notation
... - Context validation can be implemented in item selection routines or data context validation, when it is possible to identify data to be selected or ignored in some data analysis process. * NOTE: - Before any implementation, we recommend details in WIKI (https://sourceforge.net/p/csi-math-notation-postfixinfix/wiki/) or the CPAN Perl Modules, see: https://metacpan.org/pod/Math::Notation::PostfixInfix * Support: The Support Service is FREE. Do you need support? Open a ticket and I will get back to you as soon as possible. * Professional Services: Do you need any FREE professional services to use? ... -
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PINCIS
PINCIS.pl is a Perl bioinf. script to analyze PICS data
...Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be concurrently used to generate cleavage specificity visualizations like the iceLogo (https://iomics.ugent.be/icelogoserver/create). -
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Query2Report
Simple open source business intelligence and reporting solution
...The application transforms bunch SQL queries to beautiful google charts. The application caters to real time reporting with automatic refresh functionality. Refer to video tutorials Concepts - https://youtu.be/NdEUZ2suiv8 Data Analytics Demo - https://youtu.be/evCf74Ou7kg Data Forecast Demo - https://youtu.be/Nmi1UIDpFpM Report Showcase - https://youtu.be/gxlEGq5iSm8 Getting Started - https://youtu.be/vyU7BUE5rbs Building First Report - https://youtu.be/MZm6rhf2_Ts Source Repo GitHub : https://github.com/yogeshsd/query2report -
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LaueTools
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools -
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RadiationHelper
Alpha, Beta, Gamma measurements and Nuclide exposure
RadiationHelper is a data analysis tool for : 1. gross alpha and beta radiation measurement and detector calibration using experimental data (counts acquired by alpha-beta devices). 2. gamma spectroscopy measurements and detector calibration using experimental data (spectra acquired by acquisition software such as Assayer, Gamma Vision, Maestro) 3. gross alpha,beta, gamma detector efficiencies and gamma peak efficiency can be theoretical computed using Monte-Carlo simulation technique for radiation transport (based on EGSnrc toolkit) 4.dose assessment in human body exposed to radiations from nuclides in several common scenarios such as air exposure, water submersion, ground surface, internal ingestion or inhalation. 5. quick dosimetry and shielding computations. It is platform independent (written entirely in Java). Source code included in jar files! Also, available on GitHub: https://github.com/ZiliasTheSaint/RadiationHelper.git Checkout for dependent modules! -
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GlycoPAT
Comprehensive, open-source tool for glycoproteomics MS data analysis
...This program provides a novel platform for the streamlined analysis of traditional LC-MSn based high-throughput experimental data for the identification of site-specific N- and O-linked glycosylation on various proteins. More details are available at https://www.VirtualGlycome.org/glycopat Source code also available at https://github.com/kaichengub/GlycoPAT If you use this software please cite: Gang Liu, Kai Cheng, Chi Y. Lo, Jun Li, Jun Qu and Sriram Neelamegham. " A comprehensive, open-source platform for mass spectrometry based glycoproteomics data analysis", Molecular Cell Proteomics, 2017 Sep 8, in press. https://doi.org/10.1074/mcp.M117.068239 -
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DSTK - DataScience ToolKit
DSTK - DataScience ToolKit for All of Us
DSTK - DataScience ToolKit is an opensource free software for statistical analysis, data visualization, text analysis, and predictive analytics. Newer version and smaller file size can be found at: https://sourceforge.net/projects/dstk3/ It is designed to be straight forward and easy to use, and familar to SPSS user. While JASP offers more statistical features, DSTK tends to be a broad solution workbench, including text analysis and predictive analytics features. Of course you may specify JASP for advanced data editing and RapidMiner for advanced prediction modeling. ... -
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Epidat
Statistical data analysis
...Free distribution cross-platform program for statistical and epidemiological analysis of data. Sitio web: http://www.sergas.es/Saude-publica/EPIDAT Souceforge: https://sourceforge.net/projects/epidat/ Wikipedia: https://es.wikipedia.org/wiki/Epidat -
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X-SOCS
X-ray Strain Orientation Calculation Software
...For more information: http://scripts.iucr.org/cgi-bin/paper?S1600576714004506 To download the latest version of XSOCS (D. Naudet, T. Vincent, M.I. Richard, G. Chahine), follow the instruction in the following link: https://gitlab.esrf.fr/kmap/xsocs You can find on youtube video tutorials explaining the main steps to follow for a standard KMAP data analysis. In the folder XSOCS_tutorials_data of the Files tab, you can download the dataset used in the tutorials. Make sure to read the readme file. -
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Short-3DXRD
Data analysis package for 3D-XRD
Please contact the authors by sending a message (via https://sourceforge.net/users/rmhuizenga). We will be glad to send you the programs. -
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PMM-Lab
Predictive Microbial Modeling plug-in for KNIME
...PMM-Lab has been initiated and provided by the Federal Institute for Risk Assessment - BfR (Berlin, Germany). The software is in Beta status. Before using the software you have to read and accept the license and disclaimer (https://sourceforge.net/p/pmmlab/wiki/Disclaimer/). If you do not agree, do not use this software. -
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CorNetMap
A tool for Gene Expression Correlation Network
...Calculate Pearson correlation and cross-correlation for analysis data with phase difference. 4. Generate correlation Heat-map and draws network map. 5. Save correlation data as text file. How to use and doccumentation: https://sourceforge.net/projects/cornetmap/files/Documentation_corNetMap.pdf Sample data for testing: https://sourceforge.net/projects/cornetmap/files/Test%20Data/ Citation: Cite CornetMap as " Khaund, A. Bose, B. CorNetMap. https://sourceforge.net/projects/cornetmap " Credit: Abhigyan Khaund, Biplab Bose, IIT Guwahati -
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ChEnMTD
Calculate the number of theoretical trays with McCabe-Thiele method
...It has tools for data analysis to obtain empirical or semi-empirical equilibrium models. You can even use cubic splines. This project uses icons of "Open Icon Library" https://sourceforge.net/projects/openiconlibrary/ -
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Lab Processes
Rediscover the Simplicity http://www.atgclabs.com/
Help us to improve Lab Processes. We want to hear your feedback! Request new Lab Processes feature or module and receive a free Single User version with new feature. https://www.atgclabs.com/products/lp Lab Processes is a comprehensive and straightforward application specially designed for biologists and chemists who need to conduct a wide variety of tests and experiments on animals. Lab Processes requires minimal computing skills. Genetic and physiological data can be entered either manually or automatically when automated genotyping and analytical phenotypic assays are used. ... -
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bnmroffice
Beta version of bnmroffice v2
The program is used for bNMR data analysis. To download the latest version, please follow the link https://github.com/hsaadaoui
