Search Results for "analysis"
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Showing 23 open source projects for "analysis"
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PDF4QT
Open source PDF editor
PDF4QT is open source PDF editor based on Qt framework. It contains a C++ library, applications for viewing/editing PDF documents, and a command line tool. PDF4QT is an open-source PDF editor for Windows/Linux. It is a modern solution for viewing/editing/rendering PDF documents, for users and developers alike. For developers, there is a C++ library and a command line tool for use in scripts. For users, there are four applications offering many features. The project is hosted on Github and... -
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Pyright
Static type checker for Python
Pyright is a fast type checker meant for large Python source bases. It can run in a “watch” mode and performs fast incremental updates when files are modified. Pyright supports configuration files that provide granular control over settings. Different “execution environments” can be associated with subdirectories within a source base. Each environment can specify different module search paths, python language versions, and platform targets. Type inference for function return values, instance... -
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Capslock
Tool to remap Caps Lock key behavior on Windows systems
...This helps apply the Principle of Least Privilege to Go software, guiding audits, supply chain reviews, and trust assessments. Capslock aims to make security posture analysis more proactive by surfacing capability-based risk signals before malicious or overly powerful code is introduced into production. -
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PAL MCP
The power of Claude Code / GeminiCLI / CodexCLI
PAL MCP is an open-source Model Context Protocol (MCP) server designed to act as a powerful middleware layer that connects AI clients and tools—like Claude Code, Codex CLI, Cursor, and IDE plugins—to a broad range of underlying AI models, enabling collaborative multi-model workflows rather than relying on a single model. It lets developers orchestrate interactions across multiple models (including Gemini, OpenAI, Grok, Azure, Ollama, OpenRouter, and custom/self-hosted models), preserving... -
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hyperfine
A command-line benchmarking tool
A command-line benchmarking tool. Statistical analysis across multiple runs. Support for arbitrary shell commands. Constant feedback about the benchmark progress and current estimates. Warmup runs can be executed before the actual benchmark. Cache-clearing commands can be set up before each timing run. Statistical outlier detection to detect interference from other programs and caching effects. -
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SiteOne Crawler (desktop app)
A free, feature-rich web analyzer and exporter/cloner you will love!
A free in-depth website analyzer providing audits of security, performance, SEO, accessibility and other technical aspects. Available as a desktop application for Windows/macOS/Linux and as a CLI tool for advanced users and CI/CD processes. It also includes an offline web page exporter (website clone, mirror). -
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cline
Command line tool for counting source code lines
cline is a command line tool that counts code lines or non-whitespace characters in your project folder. It is designed to recursively find any source file matching specific rules and count the line breaks within that file. You may specify file suffixes to include or exclude as well as regular expressions for code lines that shall be excluded (e.g. to exclude comments). By default a heuristic algorithm skips binary files. You may configure the restrictiveness of this algorithm with command... -
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Cross Platform Node Guide
Improve front-end engineer workflow & standard, powered by TypeScript
A command-line tool aims to improve front-end engineer workflow and standards, powered by Node.js. Feflow (pronounced /ˈfefləʊ/) is a front-end flow and rule tool to improve engineering efficiency., and is hosted on Github: feflow. At present, it has been used in many applications, such as Now, Huayang Live, Huayang Friends, Mobile QQ Near Hand, Group Video, Group Gift, Huiyin, Tencent Myapp, Penguins and etc. With 80+ WEB/IOS/Andriod stable users, the cumulative production project reached... -
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Manticore
Symbolic execution tool
Manticore helps us quickly take advantage of symbolic execution, taint analysis, and instrumentation to analyze binaries. Parts of Manticore underpinned our symbolic execution capabilities in the Cyber Grand Challenge. As an open-source tool, we hope that others can take advantage of these capabilities in their own projects. We prioritized simplicity and usability while building Manticore. We used minimal external dependencies and our API should look familiar to anyone with exploitation or reversing background. ... -
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MS-Helios
MS-Helios: A Circos wrapper to visualize multi-omic datasets
Advances in high-resolution mass spectrometry facilitate the identification of hundreds of metabolites, thousands of proteins and their post-translational modifications. This remarkable progress poses a challenge to data analysis and visualization, requiring methods to reduce dimensionality and represent the data in a compact way. To provide a more holistic view, we recently introduced circular proteome maps (CPMs). However, the CPM construction requires prior data transformation and extensive knowledge of the Perl-based tool, Circos. We present MS-Helios, an easy to use command line tool with multiple built-in data processing functions, allowing non-expert users to construct CPMs or in general terms circular plots with a non-genomic basis. ... -
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PINCIS
PINCIS.pl is a Perl bioinf. script to analyze PICS data
PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be... -
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Unused
A command line tool to identify unused code
Unused identifies unused code in Rails, Phoenix, and other types of applications, improving developer productivity. By default, unused leverages a different memory allocator called mimalloc. For my local benchmarks, it speeds up execution by a significant amount (which is documented in the commit introducing mimalloc), but currently runs into sporadic issues on Apple M1 devices. If you run into issues with segmentation faults, consider reinstalling unused with the stock Rust allocator. It is... -
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Semantic
Parsing, analyzing, and comparing source code across many languages
...Semantic uses tree-sitter to generate parse trees, but layers in a more generalized notion of syntax terms across all supported programming languages. We'll see why this is important when we get to diffs and program analysis, but for now let's just inspect some output. It helps to have a simple program to parse. Symbols are named identifiers driven by the ASTs. This is the format that github.com uses to generate code navigation information allowing c-tags style lookup of symbolic names for fast, incremental navigation in all the supported languages. ... -
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TSA_CRAFT
Automatic command line tool for TSA data analysis
DSF is a high-throughput platform of TSA assay to screen various conditions that affect protein stability. To facilitate TSA data analysis, we developed an automatic tool "TSA-CRAFT". TSA-CRAFT was developed by integrating PERL script and Gnuplot. PERL scripts manage the entire workflow and data processing procedures of TSA data analysis. On the other hand, Gnuplot takes over the curve fitting and result presentation works. All analysed results are coded in an html file that can be easily displayed by a web browser. -
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cocolib / light field suite
CUDA library for continuous optimization and light field analysis
Library for continuous convex optimization in image analysis, together with a command line tool and Matlab interface. Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE: documentation on the SourceForge page is outdated and not updated anymore, please visit http://cocolib.net *** -
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FREJ stands for "Fuzzy Regular Expressions for Java" - it is a command-line tool and library which allow you easily compare strings with patterns disregarding nasty typos and considering several variants (like "Barack Obama", "B.H.Obama" etc.) Project sources are moved to github: https://github.com/RodionGork/FREJ
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NGSbinningpytools
Python tools for binning NGS scaffolds to various genomes.
Next generation sequencing has opened new avenues for sequencing prokaryotes which were difficult or either impossible to culture. Now, it is possible to sequence all organisms present in a metagenomic community. However, a critical problem is to determine the host organism for each genomic fragment present in the dataset. This project provides the computational tools for assigning the organismal identity for each genomic scaffold in the given dataset. For more detailed documentation... -
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NOTE: The library code compatible with audacity has migrated to https://github.com/claytonotey/libsbsms A subband sinusoidal modeling library/command line tool/gui for time stretching and pitch scaling audio. Download the sbsms package for the source or the win32/mac wxSBSMSPlayer package for the gui binaries.
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BCP
NGS analysis tool
BCP is a command-line tool ideated to analyze NGS data, also offering a wrapper for some common NGS software, including Fastx and Samtools. It is oriented mainly towards targeted resequencing experiments, with a set of functions for general purposes. BCP also includes a function for breast cancer risk estimation, based on the Gail model, using both clinical and genome data. -
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DReport
Console tool for creating directory level reports.
Tool to create a CSV report on directory hierarchies. Listing includes date range. Great for spreadsheet analysis to govern file archival. Another STDNOJ Project. By R.A Nagy -
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Diva is a command-line tool for dispersal-vicariance analysis, a simple method for inferring the distributional history of organisms (Ronquist, F. 1997. Systematic Biology 46:193-201).
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"No comment!" is a command-line tool that generates various comment-related metrics for source code files (e. g. comment density, blank lines per file)
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Graphical User Interface (GUI) for Aruba's WifiCfg (v1.4) command line tool. Especially useful for BartPE with WolfWare’s WZCLite plugin. Manage multiple connection profiles, check Windows status, connect, ping to verify connection, disconnect.
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