Browse Code
Next generation sequencing has opened new avenues for sequencing prokaryotes which were difficult or either impossible to culture. Now, it is possible to sequence all organisms present in a metagenomic community. However, a critical problem is to determine the host organism for each genomic fragment present in the dataset. This project provides the computational tools for assigning the organismal identity for each genomic scaffold in the given dataset.
For more detailed documentation please refer to the link below:
https://sourceforge.net/p/ngsscaffolds/wiki/Documentation/
Features
- Command-line Blast Analysis for binning scaffolds using sequence homology
- Calculation of tetranucleotide frequencies from test dataset
- Principal Component Analysis of scaffolds
- Command-line tool for selection of desired scaffolds from 3d graph of Principal Component Analysis
- %(G+C) Analysis
- Selection of desired scaffold peaks from %(G+C) graph
Project Samples
Categories
Command Line ToolsFollow NGSbinningpytools
Other Useful Business Software
Ship Agents Faster
Gemini Enterprise Agent Platform lets you rapidly build, scale, govern and optimize production-ready agents grounded in your organization's data. The platform enables developers to build custom or pre-built agents for virtually any use case. New customers get $300 in free credits.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of NGSbinningpytools!
